Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00997 ATGGCCACCACGGGAACCACCGAGAATGGCACAGCCAAGGCATCAGAACCGGAGCAGCAAGCAGTCATATCGAATGATGCCTCCGCAGTAAACCCCGCCGAACCAGCATCCACCACAGACGCAACTACTATAAACGCCACGCAGGCCGACACATCAGCTCAGGAACCCGAGGCTGAGTCTTCTCCGGCGGCAGAAGATTCTTCCTTTTTGGCCACTTCCACCACCGGCACTGCCTCTGTCACTCCACCCGAGAAGAGATGGCCGGGATGGCCTGGGTACTGCGTGTTTCGGCTCATTGTGCCGGTCCTTAAGGTAGGTAGTATTATTGGCCGGAAGGGAGAGCTCATTAAGAAGATGTGCGAGGAGACCCGAGCGCGCATTCGCGTTCTTGACGGTGCTGTGGGCACTCCTGATCGAATCgtGCTCATATCAGGAAAGGAAGAGCCAGAGGCACCACTTTCCCCTGCTATGGATGCTGTAATAAGGATATTCAAACGTGTTTCTGGATTATCTGAAAGTGACAGTGAGAACAAAGCATCAGGAGCTGCTGCAGTTGCCTTTTGTTCTGTTCGATTATTGGTAGCATCAACACAGGCTATCAATTTGATTGGGAAGCAGGGGTCACTAATTAAATCTATACAAGAGAACACTGGTGCTCTTGTTCGAGTGTTGTCAGGAGatGAGGTACCATTTTATGTTGGTTCGGATGAGAGGATTATAGAAATGCAGGGGGAAGCCTTGAAGGTACTCAAGGCTTTGGAAGCAGTAGTCGGTCACCTCAGGAAGTTTCTTGTTGATCACAGTGTTCTTCCCCTTTTCGAGAAAACTtaTAGTGCAGCGATCTCACAAGACCGCCAATCAGATTCCTGGGCTGACAAGACATTGCGGCATAATGCTTCTCAAACTAGCATCAGTACTGATAGCCTCTTATCAACAAAAAGGGATTCTCTCTTCACTGAGCGTGAAAATCAATTGGATTCACAACTCAATCCCTCTGGGATGTCACTCTATGGACAAGATTCCTCACTTTCTGGTCGTTCTTCATTACTTAGTCGCAGTGCTCCTATTGTTACAACGGTAATTCAAACAATGCAAATACCACTTTCCTATGCCGAGGACATCATTGGGATTCAAGGGACCAATATTGCTTACATTCGTCGTACTAGTGGGGCCATATTAACTGTGCAGGAGAGCCGGGTACCTGATGAAATTATTGTGGAGATTAAAGGCACGTCTTCTCAGGTTCAATTGGCGCAACAGTTGATTCAGGAAGTTATCAACAATGGTAAGGAGCCTGTCCCGAGCAGTTACAGCAGCAGGTTAGATGTGGGTCTGAGATCTGCTTACCCTCAGTTGGGCAGTACATCTTACTCCTCATCTTCATTATCCTCACAACCCTACACAGGATATGGATCATCTGGTTTAGGATCATACAGTTCTTTCAGGCTTTA 1451 0.4783 MATTGTTENGTAKASEPEQQAVISNDASAVNPAEPASTTDATTINATQADTSAQEPEAESSPAAEDSSFLATSTTGTASVTPPEKRWPGWPGYCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAVIRIFKRVSGLSESDSENKASGAAAVAFCSVRLLVASTQAINLIGKQGSLIKSIQENTGALVRVLSGDEVPFYVGSDERIIEMQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYSAAISQDRQSDSWADKTLRHNASQTSISTDSLLSTKRDSLFTERENQLDSQLNPSGMSLYGQDSSLSGRSSLLSRSAPIVTTVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQLAQQLIQEVINNGKEPVPSSYSSRLDVGLRSAYPQLGSTSYSSSSLSSQPYTGYGSSGLGSYSSFRL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00997 483 CDD PCBP_like_KH 95 164 - -
Bva05g00997 483 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 82 471 - -
Bva05g00997 483 ProSiteProfiles Type-1 KH domain profile. 93 160 - -
Bva05g00997 483 MobiDBLite consensus disorder prediction 1 84 - -
Bva05g00997 483 ProSiteProfiles Type-1 KH domain profile. 187 256 - -
Bva05g00997 483 CDD PCBP_like_KH 189 257 - -
Bva05g00997 483 CDD KH-I 361 423 - -
Bva05g00997 483 Pfam KH domain 190 256 IPR004088 GO:0003723
Bva05g00997 483 Pfam KH domain 96 148 IPR004088 GO:0003723
Bva05g00997 483 Pfam KH domain 362 424 IPR004088 GO:0003723
Bva05g00997 483 MobiDBLite consensus disorder prediction 1 58 - -
Bva05g00997 483 Gene3D - 94 264 - -
Bva05g00997 483 Gene3D K Homology domain, type 1 349 431 IPR036612 GO:0003723
Bva05g00997 483 MobiDBLite consensus disorder prediction 65 81 - -
Bva05g00997 483 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 82 471 - -
Bva05g00997 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 356 428 IPR036612 GO:0003723
Bva05g00997 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 86 148 IPR036612 GO:0003723
Bva05g00997 483 ProSiteProfiles Type-1 KH domain profile. 359 422 - -
Bva05g00997 483 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 185 268 IPR036612 GO:0003723
Bva05g00997 483 SMART kh_6 358 427 IPR004087 GO:0003676
Bva05g00997 483 SMART kh_6 186 261 IPR004087 GO:0003676
Bva05g00997 483 SMART kh_6 92 165 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00997 Bva-Chr5 5085230 5089533 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00997 K21444 - gmx:100802089 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00997 05 5085230 5089533 Bva06g00654 06 6429467 6433537 BWGD
Bva05g00997 05 5085230 5089533 Bva05g00997 05 5085230 5089533 ECH