Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00572 ATGGATGGCAGCTCGGAGAATACTCTGCAAGATGGGAAACTATACAGGGAGGTCAATTCGCTTATCGTTGCTCATCTTCGAGACAATAATCTCACTCAGGCCGCAAGTGCAGTTGCCTCAGCAACTATGACACCGTTGAATGTGGAAGCCCCGCCTAATAAGCTTCTTGAGCTGGTTGCGAAGgGCATTGCAGCAGAAAAAGATGAGGTTTTAAGAGGAACTTCATCATCTCCGTTGTATGATTTGGGTGCATCAATGCCAGTGGCATATGGCTCAGTGCCTGCTCAACGCACTAGTGGTGTTGATTTCAGTGCTGTGCAGGTCACGAAGGGCTCATCAAAGGCCTTCCCAAAGCACGAGACACGGCATCTTTCAGAACACAAGaatattgcGAGATGTGCTAGGTTTAGTCCGGATGGAAAGTTTGTTGCCACCGGAAGTGCGGACACTTCAATAAAGCTATTTGAGGTTGCAAAGATTAAGCAAATGTTACTCTCAGATGCAAAAGATGGTCCTGTACGTCCTGTCATACGGACTTTCTATGACCATACACAGCCAATAAATGATCTGGATTTTCATCCGCAAGGTACCATCCTGATTTCTGGGGCCAAAGATCACACAATAAAGttttttgatatttcaaaAAGCAATGCAAAGAGAGCATACAGGGTTATCCAGGACACACACAATGTGCGCTCTGTATCATTTCACCCCTCTGGGGATTTTCTTTTGGCAGGTACTGATCATCCAATTCCACATTTGTATGATATCAATTCCTTTCAGTGTTATCTATGTGCAAATATCCCTGAGGTTGGCGTTAATGGAGCAATAAACCAGGTAAGGTATTCATCTACAGGTGGCATGTATGTTACAGCATCTAAAGATGGTAGCATTCGGTTGTGGGATGGCATAAGCGCCAATTGTGTGCGCTCAATACCGGGAGCACATGGAACAACTGAGGCTACCAGTGCAAGTTTTACTAAAGATGAAAGATTTGTGCTCTCATGCGGGAAGGATTCTTCTGTGAAGCTTTGGGAAGTTGGGTCGGGTAGATTAGTTAAACAATATCTTGGAGCCACGCTTACGCAGCTAAGATGCCAGGCTACTTTTAATGACACAGAAGAATTTATTCTATCAATAGATGAATTAAACAATGAGATAGTTATCTGGGATGCAATGACAGCAGAGAAAGTAGCCAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCCGTAGAAGCCGCTTTTATCTCCTGTGGAACTGATAGGTCCATTCGGTTCTGGAAGGAGACTCTATA 1313 0.4425 MDGSSENTLQDGKLYREVNSLIVAHLRDNNLTQAASAVASATMTPLNVEAPPNKLLELVAKGIAAEKDEVLRGTSSSPLYDLGASMPVAYGSVPAQRTSGVDFSAVQVTKGSSKAFPKHETRHLSEHKNIARCARFSPDGKFVATGSADTSIKLFEVAKIKQMLLSDAKDGPVRPVIRTFYDHTQPINDLDFHPQGTILISGAKDHTIKFFDISKSNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHPIPHLYDINSFQCYLCANIPEVGVNGAINQVRYSSTGGMYVTASKDGSIRLWDGISANCVRSIPGAHGTTEATSASFTKDERFVLSCGKDSSVKLWEVGSGRLVKQYLGATLTQLRCQATFNDTEEFILSIDELNNEIVIWDAMTAEKVAKWPSNHVGAPRWLEHSPVEAAFISCGTDRSIRFWKETL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00572 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 302 - -
Bva05g00572 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Bva05g00572 437 Gene3D - 106 436 IPR015943 GO:0005515
Bva05g00572 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 355 IPR001680 GO:0005515
Bva05g00572 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 165 IPR001680 GO:0005515
Bva05g00572 437 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 5 436 IPR044633 GO:0005848|GO:0031124
Bva05g00572 437 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Bva05g00572 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 214 - -
Bva05g00572 437 SMART WD40_4 218 256 IPR001680 GO:0005515
Bva05g00572 437 SMART WD40_4 305 346 IPR001680 GO:0005515
Bva05g00572 437 SMART WD40_4 117 156 IPR001680 GO:0005515
Bva05g00572 437 SMART WD40_4 173 212 IPR001680 GO:0005515
Bva05g00572 437 SMART WD40_4 261 302 IPR001680 GO:0005515
Bva05g00572 437 SMART WD40_4 394 434 IPR001680 GO:0005515
Bva05g00572 437 CDD WD40 120 434 - -
Bva05g00572 437 Pfam WD domain, G-beta repeat 277 302 IPR001680 GO:0005515
Bva05g00572 437 Pfam WD domain, G-beta repeat 121 155 IPR001680 GO:0005515
Bva05g00572 437 Pfam WD domain, G-beta repeat 177 212 IPR001680 GO:0005515
Bva05g00572 437 Pfam WD domain, G-beta repeat 307 345 IPR001680 GO:0005515
Bva05g00572 437 Pfam WD domain, G-beta repeat 228 249 IPR001680 GO:0005515
Bva05g00572 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Bva05g00572 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 157 - -
Bva05g00572 437 SUPERFAMILY WD40 repeat-like 116 434 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00572 177 433 Miscellaneous Gene Families AT5G08390 22.093 2.69e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00572 K14406 - jre:108996656 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00572 05 2841653 2846496 Bva05g00572 05 2841653 2846496 ECH