Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00554 ATGGCCCCGAATCAAAGATCTCCGACCATTATTGACTCTCTTGGGGAAGAAATTGTTAGAATCGTTGCACCGGTATCAATCTGCATGTTATTAGTGGTCATCTTGGTCTCAATCCTTAATACCAACTCTTCTTCAGTATCAACCACCAGTATAGCCACTGTAGCTTACAGTGAGACAAATTCAGATTCTTCCTGGGACAAATTCGTAGGTGCCCTTTTGAACTCATTGGCTTTTGTCGTTATTGTTACTATTGTGACATTtgttttggtccttcttttctatttcagaTGCACCAAGTTCTTAAAGCTATATAtgggtttttcttcttttgttgttttggggTTCTTGGGTGGGGAAATTGCATTATTCTTAATTGAAGACTTTAGTATTCCTATTGATTGGATAACATTCTTCCTggctttgtttaattttgctGTTGTTGGTGTACTTGCTGTCTTTATGTCCAAAATGGCAATTCTTGTTACACAAGCGTACTTGGTTCTTATTGGAATGTTGGTCGCTTATTGGTTTACTATGTTACCTGAATGGACCACCTGGGCGCTGCTGGTTGCCATGGCATTATATGATCTTGCTGCAGTTTTATTACCTATTGGCCCGCTAAGGCTTTTGGTAGAGCTTGCAATAGCAAGAGATGAAGAAATCCCGGCACTGGTTTATGAGGCTAGGCCAGTGAACTACGAGAACTCCGATCCAAGGGGTGGTGTAGCTCAGAGGAGGCTGTGGAGAGATAGGGGAAATGAGAATTCAAATCTCCGAACTGGCCCCAGTCTAGGCGTCAACTCTGTGCTGAGTGAACCCTTGAATACCGAACCAAACTCTTACCTGGATGGAAATGCTGCCCtgaattcaaatttgaacAGAAATTCTTCAAATGGCACCGGCAATGACAGAAATTTGGTTAGAGCTGAAGAGGGGCGGATTGAAGAAACTGGTTCAGAGCTTTCTGCTCCGTTGATTGATCATAGAATGAATATCCAAATTCCAAGAACTGAAGATCCAGtgtcaaatgaaaatttgatgcTGGAGGGGATTGGATTGGGGTCCTCTGGTGCTATAAAGTTAGGACTGGGAGACTTTATCTTCTATAGTGTCTTGGTCGGCAGAGCAGCTATGTATGACTTTATGACAGTGTATGCATGTTATCTTGCTATTATTGCTGGTCTAGGCGTCACTTTGATCCTTTTGGCATTATATCAGAACGCTTTGCCTGCTCTTCCAGTGTCAATAGGACTTGGagtgttgttttatttcttgactAGGCTCTTACTTGAAGTATTTGTTGTACAATGTTCCATGAACCTCCTGATGTTCTA 1334 0.3861 MAPNQRSPTIIDSLGEEIVRIVAPVSICMLLVVILVSILNTNSSSVSTTSIATVAYSETNSDSSWDKFVGALLNSLAFVVIVTIVTFVLVLLFYFRCTKFLKLYMGFSSFVVLGFLGGEIALFLIEDFSIPIDWITFFLALFNFAVVGVLAVFMSKMAILVTQAYLVLIGMLVAYWFTMLPEWTTWALLVAMALYDLAAVLLPIGPLRLLVELAIARDEEIPALVYEARPVNYENSDPRGGVAQRRLWRDRGNENSNLRTGPSLGVNSVLSEPLNTEPNSYLDGNAALNSNLNRNSSNGTGNDRNLVRAEEGRIEETGSELSAPLIDHRMNIQIPRTEDPVSNENLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLILLALYQNALPALPVSIGLGVLFYFLTRLLLEVFVVQCSMNLLMF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00554 444 Gene3D Presenilin 351 436 IPR042524 -
Bva05g00554 444 MobiDBLite consensus disorder prediction 280 320 - -
Bva05g00554 444 MobiDBLite consensus disorder prediction 280 304 - -
Bva05g00554 444 SMART psh_8 69 430 IPR006639 GO:0004190|GO:0016021
Bva05g00554 444 PANTHER PRESENILIN 9 444 IPR001108 GO:0004190|GO:0016021|GO:0016485
Bva05g00554 444 PANTHER PRESENILIN 9 444 - -
Bva05g00554 444 Pfam Presenilin 15 434 IPR001108 GO:0004190|GO:0016021|GO:0016485
Bva05g00554 444 PRINTS Presenilin family signature 22 32 IPR001108 GO:0004190|GO:0016021|GO:0016485
Bva05g00554 444 PRINTS Presenilin family signature 179 186 IPR001108 GO:0004190|GO:0016021|GO:0016485
Bva05g00554 444 PRINTS Presenilin family signature 196 213 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00554 Bva-Chr5 2737201 2738763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00554 1 444 Miscellaneous Gene Families AT2G29900 59.732 7.04e-161 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00554 K04505 - qsu:112005098 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00554 05 2737201 2738763 Bva05g00554 05 2737201 2738763 ECH