Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00539 ATGAATCCTGATAAGTTTACCCACAAGACCAATGAGGCTTTTATGGATGCTCATGAATTAGCAATGGCCGCTGGCCATGCTCAATTCACTCCTCTTCATGTTGCAGCAGCTCTTATATCTGATCCTGCTGGTATTCTCTTCCAAGCAATTTCTAATGCTGCTGGGGAAGAAACTGCACGAGGAGCGGATAGAGTTTTCAATCAGGCATTGAAGAAATTGCCATCTCAGTCTCCTCCGCCTGATGAGATACCAGCAAATACTGCCCTAATAAAATGCATTCGGAGGGCACAAGCAGCACAAAAGTCTCGCGGAGACACTCATTTAGCTGTTGATCTGTTGATTCTGGCTCTTCTTGAAGATTCCCAAATTGCGGAATTACTGAAAGAAGCTGGTGTTGCTACAACAAGAGTAAGATCAGAGGTTGAAAAGCTTCGTGGGAAGGAGGGGAAAAGGGTTGAAAGTGCTTCTGGGGATACAAATTTTCAAGCCTTGAAGACTTATGGCCGTGACCTTGTTGAGCAAGCAGGGAAGCTTGACCCAGTAATTGGACGTGATGAAGAAATAAGAAGGGTGGTGAGAATTCTTTCAAGGAGGACAAAGAACAATCCAGTCCTCATTGGAGAGCCAGGGGTTGGTAAAACAGCTGTGGTAGAAGGTTTGGCACAGAGGATTGTCAGTGGGGATGTTCCTAGTAATCTTGCCGATGTGAGGCTTATAGCATTGGACATGGGTGCACTAGTCGCTGGTGCAAAATACAGGGGAGAGTTTGAAGAGCGGTTGAAGGCAGTTCTGAAAGAAGTGGAGGAAGCTGAGGGGAAAGTAATcctttttattgatgaaattcACCTAGTTCTTGGTGCGGGACGAACAGAGGGCTCAATGGATGCTGCCAATCTCTTAAAACCAATGCTTGCTCGAGGACAGCTTCGATGCATTGGTGCCACCACTCTTGAGGAATATAGGAAATACGTAGAGAAAGATGCAGCATTTGAAAGAAGATTCCAGCAGGTTTATGTTGCCGAACCTAGTGTAGTTGATACAATCAGCATCCTTAGAGGGCTGAAAGAGCGATATGAAGGTCACCACGGTGTTCGGATTCAGGATCGTACTTTAGTTGTTGCAGCTCAGTTGTCAAGTCGGTACATTACAGGGCGTCATCTTCCAGATAAAGCAATTGATTTAGTTGATGAGGCCTGTGCAAATGTGAGGGTTCAACTTGATAGTCAACCTGAGGAAATTGATAATCTTGAAAGGAAGAGGATGCAGCTTGAAATTGAACTGCATgcacttgaaaaagaaaaggacaaagcTAGCAAAGCCCGTTTGTTGGAGGTGAGGAAAGAACTTGATGACTTGAGAGATAAGCTCCAGCCCTTGATGATGAAGTataggaaagagaaagaaagaattgacGAGATTCGCCGGCTGAAGCAGAAACGAGAAGAACTCTTGATTGCTTTACAGGAGGCTGAGAGGCGATATGATTTAGCCAGAGCTGCGGACCTGCGTTATGGGGCCATTCAGGAAACTGAATCTGCCATACAACAGCTTGAAGGTAACAGTGAGGAGAGTTTGATGTTGACAGAGACTGTTAAACCTGAACATATAGCTGAGGTAGTGAGTCGTTGGACTGGCATACCGGTGACGAGGCTTGGTCAGAACGAGAAAGAAAGGTTAATTGGACTTGCTGGGAGACTGCACGAGAGAGTAGTGGGACAAGACCAAGCAGTTAATGCTGTCGCAGAGGCAGTGTTGAGGTCAAGAGCTGGGCTAGGAAGACCTCAACAGCCCACTGGTTCGTTCCTATTCTTAGGTCCAACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCCGAGCAACTCTTTGATAATGAAAATCAGCTAGTGAGAATTGACATGTCCGAGTACATGGAGCAGCACTCTGTTTCACGATTGATTGGTGCGCCACCAGGGTATGTGGGACATGAGGAGGGAGGTCAGCTAACTGAAGCCGTAAGGCGAAGACCTTACAGTGTGATACTCTTTGATGAAGTGGAGAAAGCACATACATCTGTATTTAATACTCTACTTCAGGTCTTGGACGACGGGAGATTAACTGATGGCCAAGGTCGCACTGTGGACTTCAGGAACACTGTTATCATCATGACTTCTAACCTTGGAGCAGAGCATCTACTTAGTGGACTTTCAGGAAAGAGTGCCATGGAAGTAGCTCGTGATCGAGTTATGCAAGAGGTGAGAAGGCACTTCAGACCAGAATTGTTGAATCGCCTTGATGAAATTGTTGTGTTCGATCCGCTCTCGCATGATCAACTAAGGAAGGTTGCAAGGTTGCAAATGAAGGACGTTGCCAGTCGTCTTGCCGAGAGGGGAATCGCCTTGGCGGTGACTGATGCAGCTCTGGACTTCATACTAGCGGAGAGCTATGATCCGGTTTATGGCGCTAGACCTATTAGGAGATGGCTTGAGAGGAAGGTGGTGACAGAACTTTCAAGGATGCTTGTGAGGGAAGAGATTGATGAGAATTCAACGGTTTACGTAGATGCAGGCTTCACGGGGAGCGAGCTAGTGTACCGTGTAGAAAAGAATGGAGGGTTGGTTAATGCAGCGACTGGGCAGAAGTCAGATATTTTGATTCAGATACCTAATGGCCCCAGAAGTGAGGCTGCTCAGGcagtaaagaaaatgaagatagaGGAAATCGAAGACGACGAAGATGCTGACATGGAAGAGTG 2735 0.4523 MNPDKFTHKTNEAFMDAHELAMAAGHAQFTPLHVAAALISDPAGILFQAISNAAGEETARGADRVFNQALKKLPSQSPPPDEIPANTALIKCIRRAQAAQKSRGDTHLAVDLLILALLEDSQIAELLKEAGVATTRVRSEVEKLRGKEGKRVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVSGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLLKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVVDTISILRGLKERYEGHHGVRIQDRTLVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLLEVRKELDDLRDKLQPLMMKYRKEKERIDEIRRLKQKREELLIALQEAERRYDLARAADLRYGAIQETESAIQQLEGNSEESLMLTETVKPEHIAEVVSRWTGIPVTRLGQNEKERLIGLAGRLHERVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVILFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKSAMEVARDRVMQEVRRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAERGIALAVTDAALDFILAESYDPVYGARPIRRWLERKVVTELSRMLVREEIDENSTVYVDAGFTGSELVYRVEKNGGLVNAATGQKSDILIQIPNGPRSEAAQAVKKMKIEEIEDDEDADMEE 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00539 911 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Bva05g00539 911 Pfam AAA lid domain 344 442 IPR041546 -
Bva05g00539 911 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Bva05g00539 911 Pfam Clp amino terminal domain, pathogenicity island component 17 55 IPR004176 -
Bva05g00539 911 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 862 - -
Bva05g00539 911 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Bva05g00539 911 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Bva05g00539 911 CDD AAA 182 337 - -
Bva05g00539 911 Pfam C-terminal, D2-small domain, of ClpB protein 767 847 IPR019489 -
Bva05g00539 911 Gene3D - 3 148 IPR036628 -
Bva05g00539 911 Gene3D - 344 544 IPR027417 -
Bva05g00539 911 Pfam ATPase family associated with various cellular activities (AAA) 204 318 IPR003959 GO:0005524|GO:0016887
Bva05g00539 911 Gene3D - 150 343 IPR027417 -
Bva05g00539 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 545 IPR027417 -
Bva05g00539 911 CDD AAA 571 766 - -
Bva05g00539 911 Gene3D - 767 863 - -
Bva05g00539 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 847 IPR027417 -
Bva05g00539 911 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Bva05g00539 911 Gene3D - 550 766 IPR027417 -
Bva05g00539 911 Coils Coil 253 273 - -
Bva05g00539 911 SMART ClpB_D2_small_2 767 858 IPR019489 -
Bva05g00539 911 SMART AAA_5 597 749 IPR003593 -
Bva05g00539 911 SMART AAA_5 199 344 IPR003593 -
Bva05g00539 911 Coils Coil 406 440 - -
Bva05g00539 911 Coils Coil 463 500 - -
Bva05g00539 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Bva05g00539 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Bva05g00539 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Bva05g00539 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Bva05g00539 911 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Bva05g00539 911 PANTHER ATP-DEPENDENT CLP PROTEASE 4 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00539 Bva-Chr5 2653425 2657340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00539 K03695 - egr:104426006 1563.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00539 05 2653425 2657340 Bva05g00539 05 2653425 2657340 ECH