Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00531 ATGATGTCATTATTAGGATATTCTCAGCCTGTAGTTGTACAGTACATTATTGGACTAGCCAAGCAAGCTGCTTCACCAGCTGATATGGTGGGCAAACTATCGGAGGTTGGGTTGTCATCAACGGGTGCGACTCATGCATTTGCAGAAGAAATTTTTGCAAGAGTTCCTCGTAAAGAATCTGGTTTAAATCTTTATCAGAAACAAGAGAGAGAAGCTGCAATGTTGGTGAGGAAGCAGAAGACTTACACAATTTTGGATgctgatgatgatgaggatgTTGGTCGTGATGATAAAGCTTCCATAATGGCTGCTTCTGTGTCTAGAAAGCCAGAAAGTGGCAAAAAACGGTTTAGGAGGAAAACTGAaattgaagatgatgaagatgatgagGTAATTGAGAGGGAGGAAAAGGGGAGGCATGTTAAGCCACGAACTACCCCTGATGAAGATGATGGTTCAGAGTCTGAAGAAGAAAGGTTGCGTgatcaaagagaaagagaggaattAGAACAACATCTAAGAGAACGAGATGCAGCAGGGACACGTAAGTTGACAGAGccaaaattaacaagaaaggAGGAAGAAGAGGCAATGCGGAGGTCTAATGCTGCTGCAGAGGATGATCTTCAAACTTTGagAAAGGTATCAAGACAAGAGTACctgaaaaaaagagaggaaaagaaattagatgaATTGAGAGATGATATAGAAGATGAACAATATCTATTTGAAGGCGTGAAGCTTACAGAAGCAGAACAGCGTGAGTTTAGgTACAAGAGGGAGATATATGAGCTTGTGAAGAAGCGGTCAGAGGAGGCTGACAATGCGAATGAGTACAGGATGCCTGAAGCTTATGATCAGGAGGGGGGCGTTAGTCAGGAGAAGAGATTTGCTGTTGCTTTGCAGCGATACAGggATCCAAGCGCTGAGGAGAAGATGAATCCATTTGCTGAACAAGAGGCATGGGAGGATTATCAAATTGGAAAGGCTAGGTTGAAGTTtggttcaaaaaataaaaaacaagcGTCTGATGACTATCAgtTTGTGTTTGAGGACcagattgattttattaagGAATCAGTGATGGATGGAGATCCGTTTGATGATGAAGAGATTGCACATTCACTTGAAAAGTCCAGAGCCAAGTCAGAGTTAGAAGCGCTTCAGGAGGAGAGGAAAAAATTACCCATCTATTCTTATAGGGATGATTTGCTTCAAGCTGTTCATGATCATCAAGTACTTGTTATAGTTGGTGAAACTGGTTCTGGCAAGACTACACAGATACCTCAATACCTTCATGAAGCTGGGTACACAAAGCATGGAAAGATTGCATGTACTCAGCCACGACGTGTTGCTGCAATGAGTGTTGCTGCTCGAGTTTCTCAAGAAATGGGTGTGAAACTTGGACATGAGgttGGTTACTCTATCCGTTTTGAGGATTGCACATCAGAGAAGACTATTTTGAAGTACATGACTGATGGAATGTTATTGCGAGAGTTCCTTGGTGAACCCGATCTATCAAGCTACAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTCTCAACtgatattttgtttggattggtAAAGGATATTACTCGATTCCGGCCTGATCTTAAGTTGCTGATATCAAGTGCCACACTTGATGCAGAGAAGTTCAGTGACTATTTTGATTCTGCTCCAATATTTAAAATCCCAGGGAGACGATATCCTGTTGAAATACACTATACAAAAGCACCTGAAGCTGATTACTTAGATGCAGCTATTGTAACTGCACTTCAAATCCATGTCACTCAACCAGCTGGAGATATATTGGTCTTCCTAACTGgtcaagaagaaattgaaacagCTGAAGAAATATTGAAGCATCGAACTAGGGGTTTGGGGACGAAAATTGCTGAACTCATTATATGCCCCATATATGCCAATCTTCCTACTGAGCTGCaagctaaaatttttgaaCCAACTCCTGAAGGGGCCCGTAAGGTTGTCCTTGCAACTAATATTGCAGAAACATCATTGACAATTGATGGAATCAAGTATGTGATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAATCTTTGTTAATAGCACCAATCTCAAAAGCTTCAGCAAACCAACGAGCTGGTCGTTCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGCTTATATACTGCATATAATTATTACCATGATTTGGATGATAACACTGTACCAGAAATACAGAGGACTAACCTTGCAAATGTGGTTCTGAGTTTAAAAAGCCTTGGTATAAATGACctgttaaattttgattttatggaTCCTCCTCCTGCTGAGGCTTTACTGAAAGCTCTGGAACTGCTCTTTGCATTGAGTGCATTAAATAAGCATGGTGAGCTCACTAAGGTGGGCAGGCGGATGGCGGAGTTCCCACTTGATCCCATGTTATCAAAGGCAATAGTGGCTTCAGATAAGTACAAGTGTTCAGATGATATCATCTCTATTGCTGCTATGCTTTCCGTTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTACATGCGGACAATGCTCGAATGAACTTCCATACGGGGAATGTTGGAGACCATATTGCTTTACTAAAGGTATACAATTCGTGGAGAGAGACTAATTACTCAACGCAATGGTGTTACGAAAATTATATACAGGTGAGGAGTATGAAACGTGCTAGGGATATCCGAGATCAACTTGCAAGTCTTTTAGAGAGGGTCGAGATTGAACTAACTTCAAATGAAAACGATTTagataccataaaaaaatccataacatCTGGCTATTTTCCACACTCTGCCCGGTTGCAAAAGAATGGATCTTATCGGACTGTGAAACACCCACAGACTGTTCACATACATCCTAGCTCTGGCCTAGCACAGGTGCTTCCAAGATGGGTTGTCTACCATGAACTGGTACTCACAACCAAGGAATATATGAGACAGGTCACAGAATTAAAGCCAGAGTGGTTGGTTGAGATAGCCCCACACTATTACCAACTTAAGGATGTTGAAGACTCTGTCTCCAAGAAAATGCCTCGTGGCGAAGGACGCGCATA 3101 0.3876 MMSLLGYSQPVVVQYIIGLAKQAASPADMVGKLSEVGLSSTGATHAFAEEIFARVPRKESGLNLYQKQEREAAMLVRKQKTYTILDADDDEDVGRDDKASIMAASVSRKPESGKKRFRRKTEIEDDEDDEVIEREEKGRHVKPRTTPDEDDGSESEEERLRDQREREELEQHLRERDAAGTRKLTEPKLTRKEEEEAMRRSNAAAEDDLQTLRKVSRQEYLKKREEKKLDELRDDIEDEQYLFEGVKLTEAEQREFRYKREIYELVKKRSEEADNANEYRMPEAYDQEGGVSQEKRFAVALQRYRDPSAEEKMNPFAEQEAWEDYQIGKARLKFGSKNKKQASDDYQFVFEDQIDFIKESVMDGDPFDDEEIAHSLEKSRAKSELEALQEERKKLPIYSYRDDLLQAVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGKIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLSSYSVVMVDEAHERTLSTDILFGLVKDITRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTALQIHVTQPAGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLIAPISKASANQRAGRSGRTGPGKCFRLYTAYNYYHDLDDNTVPEIQRTNLANVVLSLKSLGINDLLNFDFMDPPPAEALLKALELLFALSALNKHGELTKVGRRMAEFPLDPMLSKAIVASDKYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLASLLERVEIELTSNENDLDTIKKSITSGYFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDVEDSVSKKMPRGEGRA 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00531 1033 Pfam Helicase conserved C-terminal domain 597 725 IPR001650 -
Bva05g00531 1033 Gene3D - 571 746 IPR027417 -
Bva05g00531 1033 Coils Coil 904 938 - -
Bva05g00531 1033 Pfam Helicase associated domain (HA2) 787 861 IPR007502 GO:0004386
Bva05g00531 1033 SMART ultradead3 393 577 IPR014001 -
Bva05g00531 1033 PANTHER OS05G0389800 PROTEIN 95 1031 - -
Bva05g00531 1033 SMART ha2_5 786 878 IPR007502 GO:0004386
Bva05g00531 1033 SMART helicmild6 617 725 IPR001650 -
Bva05g00531 1033 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 591 766 IPR001650 -
Bva05g00531 1033 Gene3D - 770 928 - -
Bva05g00531 1033 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 935 1012 IPR011709 -
Bva05g00531 1033 Gene3D - 358 570 IPR027417 -
Bva05g00531 1033 Coils Coil 215 242 - -
Bva05g00531 1033 MobiDBLite consensus disorder prediction 101 210 - -
Bva05g00531 1033 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 510 519 IPR002464 -
Bva05g00531 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 919 IPR027417 -
Bva05g00531 1033 MobiDBLite consensus disorder prediction 157 210 - -
Bva05g00531 1033 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 568 IPR014001 -
Bva05g00531 1033 MobiDBLite consensus disorder prediction 133 149 - -
Bva05g00531 1033 CDD SF2_C_RHA 572 733 - -
Bva05g00531 1033 PANTHER ATP-DEPENDENT RNA HELICASE 95 1031 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00531 Bva-Chr5 2609200 2618621 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00531 K12813 - gmx:100809559 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00531 05 2609200 2618621 Bva05g00531 05 2609200 2618621 ECH