Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00503 ATGTTGATTGAAGGATTGGTTCCCGCCAATACCGCGAGTTACAGATTTTTACAACAGCACATCTTCTCTCTGTTGGGAAGTTGCAAAACCCTAAGAGAAATCGTTCAAATTCAATCCCAATTAGTTGTTAACGGCTTGGCTCAGAAAAACTACATTCTTGCAAAGCTACTGTCTTTCTACGTAACCATGGGTCGTCTCCAAGATGCGCAGAAattgtttgaaaatattgaaaatccAAGCACTACCGTCTGGAACCTGATGATAAGAGGCCATGGACACAGTGAAATGCCGTGGAAATCAGTCGAATTTTACAATCGGATGGTAGCAACTGAGGCTGAGCCCAATGGTTTTACATACTCGTTTCTTTTGAGTGCCTGCGGGCGGAGTGGGTTGATGAGAGAAGGGGAGCAAGTGCATGGTAGAGTTCTGGTAAATGGGCAACGCTCGAATGTGTTTGTCCAgacaaatttgataaatttgtatgCAAAATTTGGAGGTGATGGTGGTATTGCGCAAGCACGCCATATGTTTGATGATATGAGCCAGAGAAGCATAGTCAGCTGGAATTCTATGCTTGCAGGGTATATTAGATACAGTAATTTTGATGAGGCACGGAGAATTTTTGATGAGATGCCTCATAGAAATGTTGTGTCTTGGACGACCATGATTGCTGGATGTGCCCAAAATGGGAAGTCCAAACAAGCTTTGTCCTTTTTTAGGGAGATGCGTAGAGCCCGTGTAGAATTGGACCAGGCAGCATTGGTGGCTGCATTATCAGCATGTTCTGAATTAGGAGATCAGAAGTTGGGAAGATGGATTCATTGGTACGTTCAAGAGAGATTGAATCCTAGGAATCAGCAACCCTCTGTGTTTTTGAGCAATGCACTCATACACATGTATGCTAGCTGTGGATTAATAGATGAAGCTTGTAAAGTATTTAACAAGATGCCAGAGAAAAGCACTGTCTCTTGGACTAGCATCATCATAGCTTTTGCGAAACATGGCCATGCGCAGAAAGCCCTTCAGATGTTTAGGATGATGCTAAGTGCGGGTCTAAATAAAGTAAGACCAGATGAAATAACCTTCATCGGGGTTCTCTGTGCTTGCAGTCATGGAGGATTTATAGATGAAGGACGCCAAATTTTTGCATCCATGAACCAAACTTGGGGAATCATCCCAAGGATTGAACACTACGGGTGCATGGTTGATCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCACTTGAACTCATTCAAACTATGCCAATAGATCCAAACGATGCTGTATGGGGTGCCCTTCTTGGTGGTTGTAGAATACACAAGAATGCTGAGCTAGCATCCTATGTTGCAGTGAAGTTAATACCTGAGCTCAATACTGATCAAGCTGCAGGCTATCTTGTGCTCTTGTCAAATGTGTATGCTCTTGCCAAAAGGTGGCGGGATGTTATCGATGTGAGAAAGTATATGATTGAGATCGGTGTTAAAAAGCCCCCAGGCCGAAGTTGGATTCAAATTTATGGTGTTGTCCATGATTTTTTGGCAGGTGACATGATTCATAAacactcattttttatctatGAAATCCTTCATGGGATCACTAAGCAAGCCCATCAGGAAGGTTATGAACCAGACTTCTCAGAGTTATTTTTAGAATG 1655 0.4175 MLIEGLVPANTASYRFLQQHIFSLLGSCKTLREIVQIQSQLVVNGLAQKNYILAKLLSFYVTMGRLQDAQKLFENIENPSTTVWNLMIRGHGHSEMPWKSVEFYNRMVATEAEPNGFTYSFLLSACGRSGLMREGEQVHGRVLVNGQRSNVFVQTNLINLYAKFGGDGGIAQARHMFDDMSQRSIVSWNSMLAGYIRYSNFDEARRIFDEMPHRNVVSWTTMIAGCAQNGKSKQALSFFREMRRARVELDQAALVAALSACSELGDQKLGRWIHWYVQERLNPRNQQPSVFLSNALIHMYASCGLIDEACKVFNKMPEKSTVSWTSIIIAFAKHGHAQKALQMFRMMLSAGLNKVRPDEITFIGVLCACSHGGFIDEGRQIFASMNQTWGIIPRIEHYGCMVDLLSRAGFLDEALELIQTMPIDPNDAVWGALLGGCRIHKNAELASYVAVKLIPELNTDQAAGYLVLLSNVYALAKRWRDVIDVRKYMIEIGVKKPPGRSWIQIYGVVHDFLAGDMIHKHSFFIYEILHGITKQAHQEGYEPDFSELFLE 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00503 551 Pfam PPR repeat 322 352 IPR002885 -
Bva05g00503 551 Pfam PPR repeat 397 421 IPR002885 -
Bva05g00503 551 Pfam PPR repeat 294 319 IPR002885 -
Bva05g00503 551 Gene3D Tetratricopeptide repeat domain 7 164 IPR011990 GO:0005515
Bva05g00503 551 Gene3D Tetratricopeptide repeat domain 353 531 IPR011990 GO:0005515
Bva05g00503 551 Gene3D Tetratricopeptide repeat domain 165 278 IPR011990 GO:0005515
Bva05g00503 551 TIGRFAM PPR: pentatricopeptide repeat domain 217 250 IPR002885 -
Bva05g00503 551 TIGRFAM PPR: pentatricopeptide repeat domain 322 352 IPR002885 -
Bva05g00503 551 TIGRFAM PPR: pentatricopeptide repeat domain 186 216 IPR002885 -
Bva05g00503 551 TIGRFAM PPR: pentatricopeptide repeat domain 294 319 IPR002885 -
Bva05g00503 551 Pfam PPR repeat family 214 251 IPR002885 -
Bva05g00503 551 Pfam PPR repeat family 79 126 IPR002885 -
Bva05g00503 551 Pfam E motif 440 504 IPR046848 -
Bva05g00503 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Bva05g00503 551 Gene3D Tetratricopeptide repeat domain 279 352 IPR011990 GO:0005515
Bva05g00503 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Bva05g00503 551 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 534 - -
Bva05g00503 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Bva05g00503 551 PANTHER OS09G0411600 PROTEIN 10 534 - -
Bva05g00503 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
Bva05g00503 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Bva05g00503 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 214 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00503 Bva-Chr5 2455658 2458095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00503 6 544 Glycoside Hydrolase AT3G49170 31.801 1.29e-89 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00503 - - qsu:112023036 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00503 05 2455658 2458095 Bva05g00503 05 2455658 2458095 ECH