Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00500 ATGGCTTCCACTTCGTTGTGTTCATCAACAGTTCATTCTCAAATCAATGGATTAGTTGGGGGACTCAAGCTGCAAAAAGCGTCTCTTTTTCAACCCCGTGCCCTCACTTTCTCCAGGAGGAAAGTTACAACTACGGTGAAGGCTACGTCCCGTGTTGACAAGTTTTCAAAAAGTGACATAATTGTTTCTCCATCTATTCTTTCTGCCAACTTTGCAAAACTGGGAGAACAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCACGTTGATGTAATGGACGGTCGTTTTGTTCCAAATATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGATCTTCCTTTGGATGTGCACTTGATGATTTTAGAGCCTGAACAGCGGATTCCAGATTTTATCAAGGCTGGGGCTGACATAGTCAGTGTTCACGCTGAGCAATCTTCCACCATCCATTTGCATCGTACTGTTAATCTAATAAAAAGCCTGGGAGCTAAAGCTGGACTTGTCCTAAACCCTGCCACGCCACTGAGTGCAGTAGAATATGTTCTAGATGTGGTTGATTTGGTCTTAATTATGTCGGTAAACCCTGGATTTGGTGGACAGAGTTTTATTGAGAGCCaagtaaagaaaatatctGATTTGAGAAGAATATGCGCAGAGAGGGGACTGAACCCATGGATTGAAGTGGATGGTGGAGTCGGTCCAAAAAATGCTTATAAGGTGATTCAGGCTGGAGCTAATGCTCTGGTTGCTGGTTCTGCCGTTTTTGGAGCTAAAGATTACGCTGACGCTATAAGAGGAATCAAAACTAGCAGAAGACCTGAAGCCGTTCCTGTGTG 851 0.4383 MASTSLCSSTVHSQINGLVGGLKLQKASLFQPRALTFSRRKVTTTVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMILEPEQRIPDFIKAGADIVSVHAEQSSTIHLHRTVNLIKSLGAKAGLVLNPATPLSAVEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRICAERGLNPWIEVDGGVGPKNAYKVIQAGANALVAGSAVFGAKDYADAIRGIKTSRRPEAVPV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00500 283 Hamap Ribulose-phosphate 3-epimerase [rpe]. 59 275 IPR026019 GO:0004750|GO:0006098
Bva05g00500 283 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 16 270 IPR000056 GO:0005975|GO:0016857
Bva05g00500 283 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 89 103 IPR000056 GO:0005975|GO:0016857
Bva05g00500 283 Gene3D Aldolase class I 50 279 IPR013785 -
Bva05g00500 283 CDD RPE 61 273 IPR000056 GO:0005975|GO:0016857
Bva05g00500 283 PANTHER - 16 270 - -
Bva05g00500 283 Pfam Ribulose-phosphate 3 epimerase family 62 260 IPR000056 GO:0005975|GO:0016857
Bva05g00500 283 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 193 215 IPR000056 GO:0005975|GO:0016857
Bva05g00500 283 TIGRFAM rpe: ribulose-phosphate 3-epimerase 62 273 IPR026019 GO:0004750|GO:0006098
Bva05g00500 283 SUPERFAMILY Ribulose-phoshate binding barrel 54 276 IPR011060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00500 Bva-Chr5 2444848 2449793 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00500 K01783 - jre:109013305 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00500 05 2444848 2449793 Bva05g00500 05 2444848 2449793 ECH