Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00496 ATGACGTTAGCCTCCCAAAAGGCTCAAAGAATTATGTCCCTTTTCAAGCAATGTTCCAACATGAAGCATTTGAACCAAATACATGCTCGTATAATCCAAAGTGGGTTTGATCAAAATCTCTTCCTCATTGGAAAGATCATTGCTTTTTGTGCGGCCTCGGGGAATGGAGATATGGATTACGCCGTCTCTGTTTTTGATAGGATTGAAAACCCAGATGCCTTTATTTGGAACACCATGATTAGGGGGTTTGCCAAGAGTAATCAACCGCGCAAAGCTTTTCATTTCTACAGGAGAATGCAGGAGGAAGGAGAGATAGTAGACAATTTTACCCTCTCTTTCTTGCTTAAAGTTTCTGGTGGATTGGGATCAGTTTCCCTGGGGAAGCAATTACACTGTGACACCAGTAAACGTGGTTTGGAAGCTCATGTTTTTGTCCGGAATACACTCATTCATATGTATGGTATGCTTAAGGAGGATAAAACTGCACACCAACTGTTTGAGGAAATACCCAATGCAGATTTAGTGGCTTGGAATTCTATTATAGACTGTCATGTATGCTGTGGAAACTACAAGCAAGCGCTTGACCTGTTCAGGAGAATGGTGCAGAGTGGCATACAACCCGATGATGCCACTTTGGTGGTGACCCTCTCAGCATGTGCCGCAATTGGAGCATTAGATTTTGGGAGACAGATTCATTCCTGCATCAAAGATACTGATCTTGTTGACATTACATCGGTCTCGAATTCTCTTGTGAACATGTACGCCAAGTGTGGAGCAGTTGAAGAAGCACAAGATATATTTAGcaagatgaaaagaaagtgCTTAATTACATGGAATACCATGATTCTTGGGCTTGCATCACATGGTTATGGAGAAGAGGCGTTGGCACTTTTCTCGAAGATGTTACAAGAGAATCTTGAGAAGCCAGATGATGTTACGTTCTTGGGTTTACTCTGTGCTTGTAGCCATGCAGGAATGGTTGATGAAGGAAGAcgatattttgatattatgaGCGAAAACTACCATATCCAACCATCCATAAAGCACTATGGGTGCATGGTGGATATGTTGGGTCGCGCTGGTTTAGTCGAGGAGGCGTACGAGTTGATTAAAAGCATGCCAATAGAGTGCAATGCAGTTGTATGGAGAGCATTGTTAGCTGCATGTAGGGTTCATGGTAAAGTCGAACTAGGAGAGAAGGTGAGGAAACATCTGTTGGAATTGGACCCAGATCATAGCAGTGATTATGTTCTTCTTGCAAACATGTATGCAAGTGCAGGTCAATGGAAAGAGATGAGTCGAGAGAGAAGATCAATGCAGGAGCGGCAAATTCAGAAGCCAAAGCCAGGAAATAGCTTCATTGGCATTCCTAGAGTGAGGTCAGAAGAGCTGTACGCTGAAAGATTATTATA 1412 0.4193 MTLASQKAQRIMSLFKQCSNMKHLNQIHARIIQSGFDQNLFLIGKIIAFCAASGNGDMDYAVSVFDRIENPDAFIWNTMIRGFAKSNQPRKAFHFYRRMQEEGEIVDNFTLSFLLKVSGGLGSVSLGKQLHCDTSKRGLEAHVFVRNTLIHMYGMLKEDKTAHQLFEEIPNADLVAWNSIIDCHVCCGNYKQALDLFRRMVQSGIQPDDATLVVTLSACAAIGALDFGRQIHSCIKDTDLVDITSVSNSLVNMYAKCGAVEEAQDIFSKMKRKCLITWNTMILGLASHGYGEEALALFSKMLQENLEKPDDVTFLGLLCACSHAGMVDEGRRYFDIMSENYHIQPSIKHYGCMVDMLGRAGLVEEAYELIKSMPIECNAVVWRALLAACRVHGKVELGEKVRKHLLELDPDHSSDYVLLANMYASAGQWKEMSRERRSMQERQIQKPKPGNSFIGIPRVRSEELYAERLL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00496 470 Pfam PPR repeat 350 373 IPR002885 -
Bva05g00496 470 Pfam PPR repeat 248 273 IPR002885 -
Bva05g00496 470 SUPERFAMILY TPR-like 162 431 IPR011990 GO:0005515
Bva05g00496 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Bva05g00496 470 Gene3D Tetratricopeptide repeat domain 307 461 IPR011990 GO:0005515
Bva05g00496 470 Gene3D Tetratricopeptide repeat domain 6 122 IPR011990 GO:0005515
Bva05g00496 470 Gene3D Tetratricopeptide repeat domain 123 243 IPR011990 GO:0005515
Bva05g00496 470 TIGRFAM PPR: pentatricopeptide repeat domain 350 373 IPR002885 -
Bva05g00496 470 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Bva05g00496 470 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Bva05g00496 470 TIGRFAM PPR: pentatricopeptide repeat domain 75 107 IPR002885 -
Bva05g00496 470 TIGRFAM PPR: pentatricopeptide repeat domain 312 346 IPR002885 -
Bva05g00496 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Bva05g00496 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Bva05g00496 470 Pfam E motif 392 454 IPR046848 -
Bva05g00496 470 Gene3D Tetratricopeptide repeat domain 244 306 IPR011990 GO:0005515
Bva05g00496 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Bva05g00496 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 458 - -
Bva05g00496 470 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 458 - -
Bva05g00496 470 Pfam PPR repeat family 173 220 IPR002885 -
Bva05g00496 470 Pfam PPR repeat family 274 321 IPR002885 -
Bva05g00496 470 Pfam PPR repeat family 71 116 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00496 Bva-Chr5 2426669 2428081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00496 13 456 Glycoside Hydrolase AT3G49170 35.189 1.44e-94 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00496 - - qlo:115963933 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00496 05 2426669 2428081 Bva05g00496 05 2426669 2428081 ECH