Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00483 ATGACGGCCGTACTACGCAAACACAACCTTTGCTCACTCCGTTCGTTTCTGACTCCCCAACACAACCTCCGCCTCTATCCTCGTATACTTATTGCCTCCGCTTATGGTCTTCTTCACACCGCCGCCGAACCGCAGCACTCGGTAGAAGCAGCGAAGAAGCTAGTGCCTTGTGAACATCTAGAACAAAATCAAGCAAAACCCATCTCACTGGCTCAAAACCACGGAGAATTTGTGATTTCTGTCATAAAATCGATCACTCTTAAAACCCAGTTAGCTCAGGTTCACGCCCATATCCTCCGTACATCCCTCGTTCAAGACCCTAAAGTTTCCCTCCATTTCTTGACCCGGGTTGCACTCTCGGGTCCCTTGCAAGATACCAACTATGCCCGCTACTTCTTTGGGCAGATCAGCTACCCATCGGTTTATCTTTATAACACCATGATAAGGGCCTATTCTGTGAGCAATTCACCTGAACAGGGGTTCTATTTATATCGAGATATGAGAAGAAGAGGTTTTTGCATAGACCCATTATCGTCTTCCTCTGCAATTAAGTCTTGTATTAAGATACAATATTTACTCGGAGGGGTTCAGGTTCATGGATGTATCTTGAAAGATGGGCATCAATCAGATAGCCTTTTGCTCACAGCTCTCATGGACATATATTCCCAATGTGGGAAATGTGATGAAGCATGCAAAGTATTTGATGAGATGCCTCAGAAAGATACTGTGGCTTGGAATGTGTTGATTTCCTGCTACATTCGTAATAACCGGACTCGAGATGCTTTGAATTTGTTTCATGTTATGCAGAGTGGAAGTTATAAATGCCAACCCGATGATGTTACATGCTTACTCCTCCTTCAAGCTTGCGCCCATTTGAATGCCTTGGAATTTGGGGAACGAATTCATGGTTACATGTTGGAACATGGCTATTGTGCTTCCAAGTTGTCTAATAGtctcatatatatgtattctcGTTGTGGTTGTTTGGATAAGGCGTATGAGGTGTTTATAGCCACGACCAATAAGGATGTGGTTTCATGGACTGCCATGATCTCTGGTTTAGCAATGAATGGATATGGTAGAGCAGCTATTGAAGCATTTGAAGAGATGCAGAGAATGGGCATACGGCCAGATGATCAGACATTCACCGGAGTGCTTTCAGCTTGCAGTCACTCTGGATTGGTTGATGCGGGAATGGCATTTTTTCACCGTATGAGCGAAGAGTTTGGAATAACTCCTAATGTCCATCATTATGGGTGCGTGGTTGATCTCTTGGGCCGTGCTGGTGTACTTGATCAGGCCTATCAACTAATTATGTCAATGGTGGTAAAGCCCGATTCAACAATATGGAGGACCCTACTGGGGGCTTGCAGAATTCATGGACATGTTAGTCTCGGTGAGCGTATAATTGAACATTTGATTGAATTGAAAGCTCAAGAAGCTGGGGATTATGTTTTGCTGTTAAACATGTATTCTTCGGCTAGTCAATGGGAAAAAGTTGCAGAAGTGAGAAAACTAATGAAAGAAGAATCAATCCAAACCACACCTGGTTGTAGCACAATTGAATTGAAAGGAGTAGTACACGAGTTTGTTGTGGATGATACTTCACATCGGAGAAATAAAGAGATATATCAGATGCTGGATGAGATTAATGCGCAACTGAAGATTGCTGGTTATGTTGTTGAACTATCATCTGAGTTACACAAGTTGGACGACAAAGAAAAACAGTATGTGCTCGCTTACCATAGTGAAAAGTTGGCTATCGCTTTTGGGGTTCTTGCAACTCCACCTGGCACAACATTGAGAGTAGCCAACAATCTCCGCGTATGTGTTGATTGCcacaattttatgaaaattttttcttgggtTTACAACCGTGATTTGATCGTTAGAGACCGGAACCGAGTTCATCATTTCCGGGGAGGACACTGCTCCTGTAGTGACTATTGGTA 1952 0.4257 MTAVLRKHNLCSLRSFLTPQHNLRLYPRILIASAYGLLHTAAEPQHSVEAAKKLVPCEHLEQNQAKPISLAQNHGEFVISVIKSITLKTQLAQVHAHILRTSLVQDPKVSLHFLTRVALSGPLQDTNYARYFFGQISYPSVYLYNTMIRAYSVSNSPEQGFYLYRDMRRRGFCIDPLSSSSAIKSCIKIQYLLGGVQVHGCILKDGHQSDSLLLTALMDIYSQCGKCDEACKVFDEMPQKDTVAWNVLISCYIRNNRTRDALNLFHVMQSGSYKCQPDDVTCLLLLQACAHLNALEFGERIHGYMLEHGYCASKLSNSLIYMYSRCGCLDKAYEVFIATTNKDVVSWTAMISGLAMNGYGRAAIEAFEEMQRMGIRPDDQTFTGVLSACSHSGLVDAGMAFFHRMSEEFGITPNVHHYGCVVDLLGRAGVLDQAYQLIMSMVVKPDSTIWRTLLGACRIHGHVSLGERIIEHLIELKAQEAGDYVLLLNMYSSASQWEKVAEVRKLMKEESIQTTPGCSTIELKGVVHEFVVDDTSHRRNKEIYQMLDEINAQLKIAGYVVELSSELHKLDDKEKQYVLAYHSEKLAIAFGVLATPPGTTLRVANNLRVCVDCHNFMKIFSWVYNRDLIVRDRNRVHHFRGGHCSCSDYW 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00483 650 PANTHER OS08G0434000 PROTEIN 71 641 - -
Bva05g00483 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Bva05g00483 650 Pfam DYW family of nucleic acid deaminases 558 650 IPR032867 GO:0008270
Bva05g00483 650 Gene3D Tetratricopeptide repeat domain 143 315 IPR011990 GO:0005515
Bva05g00483 650 Pfam PPR repeat family 240 290 IPR002885 -
Bva05g00483 650 Pfam PPR repeat family 342 390 IPR002885 -
Bva05g00483 650 Pfam PPR repeat family 139 187 IPR002885 -
Bva05g00483 650 TIGRFAM PPR: pentatricopeptide repeat domain 243 272 IPR002885 -
Bva05g00483 650 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Bva05g00483 650 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Bva05g00483 650 TIGRFAM PPR: pentatricopeptide repeat domain 142 175 IPR002885 -
Bva05g00483 650 TIGRFAM PPR: pentatricopeptide repeat domain 215 241 IPR002885 -
Bva05g00483 650 Gene3D Tetratricopeptide repeat domain 409 587 IPR011990 GO:0005515
Bva05g00483 650 Gene3D Tetratricopeptide repeat domain 316 408 IPR011990 GO:0005515
Bva05g00483 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 240 IPR002885 -
Bva05g00483 650 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 71 641 - -
Bva05g00483 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Bva05g00483 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 413 IPR002885 -
Bva05g00483 650 Pfam PPR repeat 317 336 IPR002885 -
Bva05g00483 650 Pfam E motif 460 522 IPR046848 -
Bva05g00483 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00483 Bva-Chr5 2377478 2380292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00483 93 650 Glycoside Hydrolase AT3G49170 35.273 1.63e-115 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00483 - - lja:Lj0g3v0169319.1 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00483 05 2377478 2380292 Bva05g00483 05 2377478 2380292 ECH