Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00461 ATGGACTCCGTCCAAACCCTTCCTCCAGCATCTGACTTCTCGCCCtcagcattttcttttctcaatgaCAAATTTCGCACCAAAGATAGTTTTGCCCAAGCTCCGAGTTTGGTTTCGGAGCTGGAAGCCCAGTGCTTTGATTTAGATCAAGCTTTAGTCGAATTGAATCGGAGCCTCGGAGCGGGACTTGTATCTTATGCTTCGTTCTCAGGCCAAATCCATGGCCTCTTCAACAATGTCAATGCCAAATTGAATGATCTTAGATCTTCTACTTGCTCGTCAAGCACTATCTCAGACGGAGCAAGTGGAGAGAAGAATGGCAAGGCAGGGAATATTTTCAGAGAGGAACTTCCGGCTTTGGCAAAAGAAGTAGCAAAGTTGGAGACTGTTCGTGTCTATGCAGAAACAGCTTTAAAACTTGATACTTTAGTTGGCGACATTGAAGATGCTGTATCATATACCATGAATAAAAACTTAAGGAAGCATTCTTCTACACAGAACTCAGAAGAAGTGCGTATGCTTGCTATTAGAACGCTTAAAACGACAGAAGAAATGTTAACTTCAATTACAAGGAGACACCCTCAATGGAAGCATCTGGTATCAGCAGTTGATTATAGAGTAGATCGAGCCCTGGCCATTTTAAGACCTCATGCAATTGCTGATTATCGGGCCCTTCTTGCTTCCCTTGGATGGCCCCCACCTCTTTCTGCTTTGAATTCAGATGCTGGGAATGCAAATCAAGTCCTGAATCCTCTATCAAGCATGCAGTCAGATCTCAAACTCAAGTATTCTGAAAACTTTCTTGCGCTGTGCAACCTACAGGAGTTGCAAAGGCAAAGGAAAGCTAGGCAACTTGAGGGCCATGATAGGGAAGTTGCTCTGCATCAACCACTTTGGGCAATTGAAGAGCTTGTGAACCCCATATCATTGGCATCCCAACGCCATTTCTCAAAATGGGTTGACAAGccagaatttatttttacacttgtGTATAAGATCACAAGAGATTATGTTGACTCAGTGGATGAATTGCTGCAGCCATTGGTCGACAAAGCAAAGCTAGTTGGGTATAGTTGCAGAGAAGAATGGATCTCAGCAATAGTAACCTCATTATCAACACACTTGGCAAAAGAAATATTCCCTGTTTTCATTAGCCAACTGGATGAAGAGAGCGTCACAGGTGTTCAGTCACCTGCTAGAATATCATGGCTGCATCTTATTGACTTGATGATATCTTTTGACAAAAGGATTAAGTCTCTGGTAGAGCAATCTGGAATATTGCTTTCCTTTGAGGAGGATGAGATCCTGCagaaaatttcttctctatcTGTTTTTTGTGATCGACCAGACTGGCTTGATTTATGGGCAGAAATAGAGCTCAATGATACTCTGGATAAGTTGAAACCTGACACAGATGATGAGAGGAATTGGAGAAAGAGGGTGGAAGTTGTAGCTCTTTCATCTTCTCCTGATGATCACAAGCCTCCTCTAGTTTCCAGTACCTTTCTTCGGCATCTAGCATCTGTAATTGATCGATGTCGGTCATTGCCTAGTGTTTCTTTGAGGTCAAGATTTCTCAGACTAGTAGGTGTGCCTATTATTAGGAAATTCTTTGATTGCATGCTTGTCCGCTGCCAAGAGGCTGAAGGATTAACTGCCTTAACTGATGATGATGCCTTGACTAAAGTTGTAATTTCCATCAATGCTGCTCATTATTTTGAATCTGTATTAAAGGAATGGTCCGAGGATGTTTTTTTCCTTGAGATGGGGATGGATCAGGATGATAAAGTggaattatcaattaattcaaatataaatagtgGAGGGTTTCCTGAGAGTCCTGGGAAGGGTATCTTTGATGAGGAGATGAGAAAGTTTGAGGAGTTCAGAGCAGAGTGGGTTGAAAAGATATCTTTAGTTATCTTGAGAGGATTTGATACTCGTTCTCGAGATTATGTGAAGAACAGGAAGCAGTGGCAGGAGAAGGGTGAAGAAGGCTGGACTCTATCTAAGACTCTAATTGAGGCTCTCGATTATCTGCAAGCTAAAATATCATTAGTGGAAGTACATTTGAATAGTAGGGATTTTGTTGgtatatggagaagtttggcaGCAGGCATTGATCGATTAATTTTTGGGGGTATTCTCACAAGCAATGTCAAATTTCATAACAGTGGTGTTGAAAGGTTTGGTCGTGACTTGGATGTTTTATTTGGGATATTCGGGGCATGGTGTTTGAGGCCTGAAGGTTTCTTCCCTAAAGTAAGTGAAGGTCTTAAGTTGTTGAGAATGGATGAAAACAAAGCGCAAGAATGTTTGGCAGGGGGCGACAGGTGGTTGAAGGAGAGTGGGATTAGGCATTTGAGTATAGCTGAGGTAGAGAAGATCGTGAAGAGCAGAGTATTCACAAGTTG 2414 0.406 MDSVQTLPPASDFSPSAFSFLNDKFRTKDSFAQAPSLVSELEAQCFDLDQALVELNRSLGAGLVSYASFSGQIHGLFNNVNAKLNDLRSSTCSSSTISDGASGEKNGKAGNIFREELPALAKEVAKLETVRVYAETALKLDTLVGDIEDAVSYTMNKNLRKHSSTQNSEEVRMLAIRTLKTTEEMLTSITRRHPQWKHLVSAVDYRVDRALAILRPHAIADYRALLASLGWPPPLSALNSDAGNANQVLNPLSSMQSDLKLKYSENFLALCNLQELQRQRKARQLEGHDREVALHQPLWAIEELVNPISLASQRHFSKWVDKPEFIFTLVYKITRDYVDSVDELLQPLVDKAKLVGYSCREEWISAIVTSLSTHLAKEIFPVFISQLDEESVTGVQSPARISWLHLIDLMISFDKRIKSLVEQSGILLSFEEDEILQKISSLSVFCDRPDWLDLWAEIELNDTLDKLKPDTDDERNWRKRVEVVALSSSPDDHKPPLVSSTFLRHLASVIDRCRSLPSVSLRSRFLRLVGVPIIRKFFDCMLVRCQEAEGLTALTDDDALTKVVISINAAHYFESVLKEWSEDVFFLEMGMDQDDKVELSINSNINSGGFPESPGKGIFDEEMRKFEEFRAEWVEKISLVILRGFDTRSRDYVKNRKQWQEKGEEGWTLSKTLIEALDYLQAKISLVEVHLNSRDFVGIWRSLAAGIDRLIFGGILTSNVKFHNSGVERFGRDLDVLFGIFGAWCLRPEGFFPKVSEGLKLLRMDENKAQECLAGGDRWLKESGIRHLSIAEVEKIVKSRVFTS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00461 804 ProSiteProfiles RINT1/TIP20 domain profile. 210 804 IPR007528 GO:0006888|GO:0006890|GO:0070939
Bva05g00461 804 PANTHER RINT1-LIKE PROTEIN MAG2 1 803 - -
Bva05g00461 804 Coils Coil 38 58 - -
Bva05g00461 804 Pfam RINT-1 / TIP-1 family 299 798 IPR007528 GO:0006888|GO:0006890|GO:0070939
Bva05g00461 804 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 618 743 IPR042044 -
Bva05g00461 804 PANTHER RAD50-INTERACTING PROTEIN 1 RINT-1 1 803 IPR007528 GO:0006888|GO:0006890|GO:0070939
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00461 Bva-Chr5 2277504 2281889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00461 K20474 - gmx:100817178 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00461 05 2277504 2281889 Bva05g00461 05 2277504 2281889 ECH