Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00435 ATGATACGAGCAAAGCAGATCAGTACCCTTTCAAGTGGTGCTAGGACTTTTCTCTTTGGTGGTTCACGATGCAATGCAGCAGATGGAAACGGAAGTACATGCACTTGTTCCGAGGATGAACCATGCATGTCAAGAAGACAGAATggagaaaatgaagttttACTTGCACAAAAGCCACCCACCTTAGTGTCCAAGACTACACCTGGAGTGGGAGGAACATTGGTTTCAAGAGACTCAGTAAATGCGCTCTGTTCTCACAAGGCTGAGTATGTTAATCAATCAGGATATGTGCAAGGAATTGTGTCTACTCCAAATCCATCGAGAAAATCAGATTCCGTAACATATGCATGTAATATTGATGGTGTTGGAAGCCATGCAGTGCACTCATCTCTTAATGCTGATCAGTTTATAAGGGCTGGTATTGCAGCTGTCAGTTTTCTTGCTGATTTAGCTAATTATAAGCTTCCTATGCCAGATGGAAGTGGAATGCTAAACTACAAAAGTTGTATGGTTGATGCCGCCAGCTCCGTGCCCAACGTTAGATCTTCACATGTGAAACACATTCAAAGGGAGGAATTTTCCAGCATTCATCCAAAACTATCTGCTCCTATCGATTCAGGGTCAACCCGTACAATTAATTATCATGGAATAAAGGGAAAGGGtgataaatcaaatttagCTAAAGGCTTAAAGCATGCTCCTTCTGGGACGGAGAAGTCGGTGGTGACATCAAGTATTCCTTTTGATAATCGTGATCAGGGTTCCATACCACAGAGGACAAGAAATTCAAACCAGTTTGTGAAAGATTTTGGTTCCAATATGCAGAAATCAAATCCGCAGATTGTGGGATCAATCAAGCAAGGTTTCAATAAGCATACTAGAGATCTTAAAATGCCGGCAGGAATTGCTTCAACAAACAGGCATTTCCCACATACAGGGCGTGTAGTGGAAATGGTTTTAGATATACTGCAACAGCTAAAGTGGGGTCCTGCCACTGAGAAAGCTCTCTATAATCTGAATTGTTCGATTGATGCATATCAGGCTAACCAAATTCTGAAGCAACTTCAAGACCACTCTGTTGCTCTTGGCTTTTTCTACTGGTTAAAGCGTCAACCAGGCTTCAAACATGATGGGCATACTTATACAACCATGGTTGGCATCCTTGGTCGAGCTAGACAATTTGGTGCAATAAACAAATTGCTAGAGCAGATGGTTAGTGATGGATGCAATCCCAACGTTGTAACTTATAATCGCCTGATTCATAGCTATGGCCGCGCCAACTACCTGAAGGAAGCGCTTAACGTTTTCCATCAAATGCAGGAGATGGGATGTGAGCCTGACCGTGTCACTTACTGCACTCTTATTGATATCCATGCAAAGGCTGGATTTCTTGATGTTGCGATGTCCATGTATGAAAGAATGCAAGAAGCTGGTCTTTCTCCTGATACATTTACCTACAGTGTAATAATCAACTGCCTTGGAAAAGCTGGCCATTTAGCTGCTGCTCATAGGCTCTTCTGTGAGATGGTTGATCAGGGTTGTGTTCCTAATTTGGTCACCTATAATATCATGATTGCTTTGCAAGCGAAAGCAAGGAACTATCAGACGGCATTGAAACTATATCGTGACATGCAGAATGCAGGATTTGAACCTGATAAAGTGACTTACAGCATAGTAATGGAGGTGCTTGGGCACTGTGGATATCTTGAGGAAGCAGAAGCAATTTTTGTTGAGATGAAACGGAAAAATTGGGTTCCTGATGAACCTGTTTATGGTCTTTTAGTAGACCTTTGGGGAAAGGCTGGTAATGTTGAGAAGGCTTGGGAATGGTACCAGGCAATGCTTCATGCAGGTTTGCGGCCAAATGTACCAACTTGTAATTCCCTTCTCAGTGCATTCCTCAGGATGCATCGGTTGCCAGATGCATATAATCTTCTGCAAAGCATGGTCGCTCTTGGTTTAAACCCTTCTTTGCAAACTTACACTTTGCTTCTGAGTTGTTGTACCGAGGCACGGTCGCCATATGATATGGGTTTTTGTTGTGAACTTATGGCCGTTACTAGTCATCCTGCACATGCTTTTTTACAATCCATGCCACCAGCAGGACCTGATTGTCAAAACGTGCGGGATCACATGAGCAAATTCTTGGATCTCATACATAGTGAGGACAGGGAGAGCAAAAGGGGACTTGTAGATGCAGTGGTGGATTTTCTCCACAAGTCCGGGCTCAAGGAGGAGGCTGGTTCAGTTTGGGAGGTGGCTGCAATAAAGAATGTGTATCCAGATGCTGTCAAGGAGAAAAGTTCTTGTTATTGGCTTATAAATCTTCATGTTATGTCCGATGGAACTGCTGTAACAGCATTGTGTAGGACCCTTGCTTGGTTTCGGCGACAGATGTTGACATCTGGTATTAGTCCTAGCCGGATTGATATTGTCACTGGCTGGGGTCGTAGGAGCAGGGTAACAGGATCTTCTCTGGTGAGGCAATCAGTGCAGGAATTACtgaatatttttagttttccgTTCTTTACGGAAAATGGCAATTCAGGATGTTTCGTGGGATGTGGGGAGCCTCTTAGCAAATGGTTACTCCAGTCTTATGTGGAGCGCATGCATTTACTGTA 2624 0.428 MIRAKQISTLSSGARTFLFGGSRCNAADGNGSTCTCSEDEPCMSRRQNGENEVLLAQKPPTLVSKTTPGVGGTLVSRDSVNALCSHKAEYVNQSGYVQGIVSTPNPSRKSDSVTYACNIDGVGSHAVHSSLNADQFIRAGIAAVSFLADLANYKLPMPDGSGMLNYKSCMVDAASSVPNVRSSHVKHIQREEFSSIHPKLSAPIDSGSTRTINYHGIKGKGDKSNLAKGLKHAPSGTEKSVVTSSIPFDNRDQGSIPQRTRNSNQFVKDFGSNMQKSNPQIVGSIKQGFNKHTRDLKMPAGIASTNRHFPHTGRVVEMVLDILQQLKWGPATEKALYNLNCSIDAYQANQILKQLQDHSVALGFFYWLKRQPGFKHDGHTYTTMVGILGRARQFGAINKLLEQMVSDGCNPNVVTYNRLIHSYGRANYLKEALNVFHQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEAGLSPDTFTYSVIINCLGKAGHLAAAHRLFCEMVDQGCVPNLVTYNIMIALQAKARNYQTALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAIFVEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLRPNVPTCNSLLSAFLRMHRLPDAYNLLQSMVALGLNPSLQTYTLLLSCCTEARSPYDMGFCCELMAVTSHPAHAFLQSMPPAGPDCQNVRDHMSKFLDLIHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAIKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALCRTLAWFRRQMLTSGISPSRIDIVTGWGRRSRVTGSSLVRQSVQELLNIFSFPFFTENGNSGCFVGCGEPLSKWLLQSYVERMHLL 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00435 874 Pfam PPR repeat 380 409 IPR002885 -
Bva05g00435 874 Pfam PPR repeat 590 618 IPR002885 -
Bva05g00435 874 Pfam PPR repeat family 516 562 IPR002885 -
Bva05g00435 874 Pfam PPR repeat family 621 668 IPR002885 -
Bva05g00435 874 Pfam PPR repeat family 411 457 IPR002885 -
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Bva05g00435 874 ProSiteProfiles Smr domain profile. 774 855 IPR002625 -
Bva05g00435 874 PANTHER OS03G0856100 PROTEIN 1 874 - -
Bva05g00435 874 Gene3D Tetratricopeptide repeat domain 613 677 IPR011990 GO:0005515
Bva05g00435 874 Gene3D Tetratricopeptide repeat domain 332 477 IPR011990 GO:0005515
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Bva05g00435 874 MobiDBLite consensus disorder prediction 214 259 - -
Bva05g00435 874 SMART SMR_2 771 863 IPR002625 -
Bva05g00435 874 MobiDBLite consensus disorder prediction 237 259 - -
Bva05g00435 874 Gene3D Tetratricopeptide repeat domain 481 612 IPR011990 GO:0005515
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Bva05g00435 874 PANTHER BNAA07G31720D PROTEIN 1 874 - -
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Bva05g00435 874 Pfam PPR repeat 478 510 IPR002885 -
Bva05g00435 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Bva05g00435 874 SUPERFAMILY SMR domain-like 772 852 IPR036063 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 625 657 IPR002885 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 449 483 IPR002885 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 379 413 IPR002885 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Bva05g00435 874 TIGRFAM PPR: pentatricopeptide repeat domain 554 588 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00435 Bva-Chr5 2150314 2154356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00435 371 684 Glycosyltransferase AT1G05670 30.573 5.70e-38 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00435 - - gmx:100819996 1395.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00435 05 2150314 2154356 Bva05g00435 05 2150314 2154356 ECH