Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00410 ATGGTTTCTGATTCAATCAACACAGCCCCGATTCCTTCAGCCGCAAATGCTAAGAACTTGGGCAAAAAGAAGAGGACTAATCGGTCCGCCAAATTGAAGCAGTGTAAGTTCGACGCCCGTCGCGAGCAATGGCTATCTCAAGGTGCGGTCAAGAATAAGGGATGCAAGGACGGACATGAACTGGATGATGTTCAGACCCCGCCAACGCCGGAGGGGAAAGACATCAAACGGTCGTTGGAGAAATTGGAGATGAGGACTAGAGGGGAAGAGAATGAAGGATCGATCCAGCAAGATAGCGATTTGGAATCGCCATCTAACAGTCCCACCAGCTTTAATAGTAGCGTGTTGGGCGGTAATGATTCTGGAACAAATTTCACTGggagcagcagcagcagcagtgGCAGTGCCGGGTGCTGGTCTGGGAATATCacggaagaagaagaaggtgatGAAGGATGCTTGGATGATTGGGAGGCTGTGGCTGATGCATTAGCCGCCGATGACAAGCATCAAAACCAGGGTTCAGAATCGCCACCTGCGCCTGAAACTGTCATACAAATGGTTTCCCCCTGTGAAATAACTAACGGGTCGAACTTAGGAATGCGGGATTCTAAACCAGAAAGTTCTAGATCAGTCCCAAGGGCCTCTGGAAACTGCCGagcttggagacctgatgacGCTTATCGTCCTCAGAGTTTACCCAATCTATCTAAGCAGCTTTGTTTATCAAATCCTGACCGGCATTATGGAGGAGGGATGCGTTGGGCGTGTACTGCTGTACCATCATCATGTCCAATATGCTACGAGGATCTGGATGTCACAGACTCAAGCTTTTTACCTTGTTTGTGTGGGTTTCGGCTTTGCCTATTTTGCCACAAGAGGATACTGGAGGAGGATGGGCGTTGTCCGGGGTGCAGGAAAGCATATGAATGCGAACCCATTGAGACAGAGGCAAGCGTATATGGAGGAAGCCTGACATTCCGGTTGGCCCGTTCTTGTAGCATGATTGAAAGGTCTTA 1019 0.4632 MVSDSINTAPIPSAANAKNLGKKKRTNRSAKLKQCKFDARREQWLSQGAVKNKGCKDGHELDDVQTPPTPEGKDIKRSLEKLEMRTRGEENEGSIQQDSDLESPSNSPTSFNSSVLGGNDSGTNFTGSSSSSSGSAGCWSGNITEEEEGDEGCLDDWEAVADALAADDKHQNQGSESPPAPETVIQMVSPCEITNGSNLGMRDSKPESSRSVPRASGNCRAWRPDDAYRPQSLPNLSKQLCLSNPDRHYGGGMRWACTAVPSSCPICYEDLDVTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKAYECEPIETEASVYGGSLTFRLARSCSMIERS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00410 339 MobiDBLite consensus disorder prediction 195 226 - -
Bva05g00410 339 MobiDBLite consensus disorder prediction 1 152 - -
Bva05g00410 339 CDD mRING-HC-C4C4_CNOT4 264 307 IPR039515 -
Bva05g00410 339 MobiDBLite consensus disorder prediction 53 94 - -
Bva05g00410 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 321 IPR013083 -
Bva05g00410 339 MobiDBLite consensus disorder prediction 97 140 - -
Bva05g00410 339 SUPERFAMILY RING/U-box 262 315 - -
Bva05g00410 339 ProSiteProfiles Zinc finger RING-type profile. 264 306 IPR001841 -
Bva05g00410 339 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 7 337 IPR039780 GO:0004842|GO:0030014
Bva05g00410 339 Pfam RING/Ubox like zinc-binding domain 264 310 - -
Bva05g00410 339 MobiDBLite consensus disorder prediction 195 215 - -
Bva05g00410 339 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00410 Bva-Chr5 2020898 2022551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00410 - - mnt:21392276 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00410 05 2020898 2022551 Bva05g00410 05 2020898 2022551 ECH