Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00403 ATGTTCTCCCGGCTATTTCGAACTAGGACATCATCTCAAGTGTACCTCTTTCCCCCTGCAACGCCACGATTTCCTCTTCTATGTCACCCGTTCACCACTGGCACTGGGGTCCAAGAGTCATCACCACTACCAGCGGCGGCGCAAGAGGCCGCCATAGCCAAGCTTATCATCGAATTAGATCCACTATCCCTTTCCGAAACCCTAGAAAAATCCTCTTTCCAATGGACTCCAGACCTGGTGGACAAGGTCCTCAAACGTCTCTGGAACCACGGACCCAAAGCgcttcaatttttcaaacaaCTAGACCGCCACCAGACCTACACTCACTCCTCGTCGTCCTTCGATTACGCCATTGACATCGCCGCCCGTATGCGTGACTACAAGACTGTGTGGACTCTCGTTGCTCGAATGCGGTCTCGCCGGCTCGGACCCAGCCCCCGGACTTTTGCAATTATTACCGAGAGGTATGTCTCTGCTGGTAAGGCTGATAGAGCTGTAAAGGTTTTTCTGTCAATGCACGAACATGGTTGTCGTCAGGATTTGAACTCTTTCAATACGCTTCTTGATTTGTTATGCAAATCCAGACGAGTTGAAATGGCTTATAAATTGTTCAAGGATTTCAGAGGCAGATTTAAGGCTGATACTGttagttataatataattgcaAATGGTTGGTGCTTGATCAAGCGAACGCCCAAGGCGTTGGAGGTGATGACGGAGATGGTGAAAAGGGGATTGACTCCGTCTTTAACTACgtataatatattgattaaagGGTTTTTTAGGACTGGTGAGCTCAAAAAAGCTTGGGAGTTCTTTCTGGaaatgaagaagaggaaatgTGATGTTGATGTTGTTACTTATACTACCATGGTTCATGGGTTTGGTGTAGCAGGTGAAATTAAGAAAGCTAGAAAGGTTTTTGATGAGATGGTTAGAGATGGTGTTCTTCCCTCTGTGCCAACATATAATGCTTTGATTCAGGTTTTATGCAAGAAGGATAGCGTTGAAAATGCTATATTGGTTTTTGAAGAGATGATGAGGAAGGGTTATCAGCCTAATTCAACCACTTACAGTGTAATTATCAGAGGGTTATGTCATACTGGTGACATGGAAAGGGCGGTGAAATTTGTGGCAAGAATGGAGAAAGACGATTGTGAGCCAAATGTTCAGACATATAATGTCATGATCCGATATTTTTGTGATTCTGGGGAGATAGAAAAGGGTTTGAACTTGTTTGACAAGATGGGAAAGGGTTCATGCTTGCCCAATTTGGacacatataatattttgattagtgCAATGTTTGTGAGGAAGAAATCAGATGATTTAGTGGTTGCTGGGAAGTTGTTAATAGAGATGATTGATAGAGGATTTCTGCCCcgaaagtttatttttaatcggGTATTAAATGGACTTTTCCTAACTGGTAATCAAGATTTTGCACGAGACATATTAAGACTGCAGAGCAGATCTGGTCGTGTTCCTCgtcatttgaaattatg 1505 0.4086 MFSRLFRTRTSSQVYLFPPATPRFPLLCHPFTTGTGVQESSPLPAAAQEAAIAKLIIELDPLSLSETLEKSSFQWTPDLVDKVLKRLWNHGPKALQFFKQLDRHQTYTHSSSSFDYAIDIAARMRDYKTVWTLVARMRSRRLGPSPRTFAIITERYVSAGKADRAVKVFLSMHEHGCRQDLNSFNTLLDLLCKSRRVEMAYKLFKDFRGRFKADTVSYNIIANGWCLIKRTPKALEVMTEMVKRGLTPSLTTYNILIKGFFRTGELKKAWEFFLEMKKRKCDVDVVTYTTMVHGFGVAGEIKKARKVFDEMVRDGVLPSVPTYNALIQVLCKKDSVENAILVFEEMMRKGYQPNSTTYSVIIRGLCHTGDMERAVKFVARMEKDDCEPNVQTYNVMIRYFCDSGEIEKGLNLFDKMGKGSCLPNLDTYNILISAMFVRKKSDDLVVAGKLLIEMIDRGFLPRKFIFNRVLNGLFLTGNQDFARDILRLQSRSGRVPRHLKL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Bva05g00403 501 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 37 501 - -
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Bva05g00403 501 Pfam PPR repeat 216 246 IPR002885 -
Bva05g00403 501 Pfam PPR repeat 183 208 IPR002885 -
Bva05g00403 501 Pfam PPR repeat 156 177 IPR002885 -
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Bva05g00403 501 Gene3D Tetratricopeptide repeat domain 270 380 IPR011990 GO:0005515
Bva05g00403 501 Gene3D Tetratricopeptide repeat domain 66 269 IPR011990 GO:0005515
Bva05g00403 501 PANTHER OS02G0679200 PROTEIN 37 501 - -
Bva05g00403 501 SUPERFAMILY HCP-like 191 352 - -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 216 249 IPR002885 -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 322 354 IPR002885 -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 357 390 IPR002885 -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 148 180 IPR002885 -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 392 424 IPR002885 -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 183 208 IPR002885 -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Bva05g00403 501 TIGRFAM PPR: pentatricopeptide repeat domain 252 284 IPR002885 -
Bva05g00403 501 Pfam PPR repeat family 248 295 IPR002885 -
Bva05g00403 501 Pfam PPR repeat family 318 367 IPR002885 -
Bva05g00403 501 Pfam PPR repeat family 388 435 IPR002885 -
Bva05g00403 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 210 IPR002885 -
Bva05g00403 501 Gene3D Tetratricopeptide repeat domain 381 445 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00403 147 496 Miscellaneous Gene Families AT4G11690 29.714 6.77e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00403 - - zju:107418580 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00403 05 1996574 2000032 Bva05g00403 05 1996574 2000032 ECH