Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00346 ATGTCATCAGCTACGAGGGATCAAGGGATTGTTCGCAGGCTGGCGAGCTTTCCTCGAAGTATTATGGGAGAGTTTTCAAGAGCGTTTGATGATGGTATGAGCTTCAtgggaagaggaagaagaagaaatcaacAAGTACCCTCAAGTTTCCAAGTGCCTATTCTGCCTCAATCACCAGAGCATCGCCCTGTTCTTCCAGACGAATGGGCTTTTCTGGAGAGTTTCGAGCAGCAATACAGTACCACTCATCCATTTTTCTACGCTTGCCGTTTTATGGAGGCTCTCAAGTTGGCAgaacaagacaaaaaattcATGTTCATGTACCTGCACTCACCAGAACAACCTTTTACCCACATTTTCTGCAGCCAGACACTGTGTTCGGAGCTGGTGACGCAGTTTCTTGACGTTAATTTCGTGTGCTGGGGAGCACTGGCAGACAGAGGAGAAGGTCTTCGAATGGTAGCAACACTACGCCCTTCTACCTTCCCCTGTTGCGCTATCATAGCCCCTGCTCCCGGTGATACCATAACAGTACTGCAACAGATAGAGGGTCCGGTTTCACCAGCTGAGCTGGTGGCAATTCTACAGAGAACAATGGAAGAACAAGGAGTGGCTTTTGGAATTGCTCAACCTAAGCACGAAGAAAATATCAGAGCAAGACGTCAGCAGGAAGAGAAGATTCGAGCAGATCGTCAACTACGAGAAGAACAAGACGCCGCATATCTTGCTGCTTTGCAAATGGACAAGGAAAAAGAGAGACTTAAGAATTTGCATTCAAGAGAGAAAGTTCAAGCACCTGCAGAAACTTCCGCCACAAGAAATTATGAGAAGCTGAGGAACAATTCAGTCAGTAAACAGCCCAGCAAAGTGAACGAGCTTACTAGTACTACAAAGGAGAACCAATTCAAAGGGATTGCAACAAGGGGTGGCGAGTCTCAGCCCACACAGATATTGATAAGGTTTCCAAATGGGGAAAGAAGAGAGCAGAGTTTTCTGTGCACAGACAAAATACAGTCCATTTTTACATACATTGATTCATTAGGCCTGCAGGGAATTGGGAACTACAGATTAGTATCAAACTTTCCCAGAAGGGTTTATGGCGTGGATCAGATGAGAATGACCCTAAAAGATGCTGGCTTGCATCCTAAAGCTAGCCTATTCCTTGAGCCTGTGTG 1175 0.4443 MSSATRDQGIVRRLASFPRSIMGEFSRAFDDGMSFMGRGRRRNQQVPSSFQVPILPQSPEHRPVLPDEWAFLESFEQQYSTTHPFFYACRFMEALKLAEQDKKFMFMYLHSPEQPFTHIFCSQTLCSELVTQFLDVNFVCWGALADRGEGLRMVATLRPSTFPCCAIIAPAPGDTITVLQQIEGPVSPAELVAILQRTMEEQGVAFGIAQPKHEENIRARRQQEEKIRADRQLREEQDAAYLAALQMDKEKERLKNLHSREKVQAPAETSATRNYEKLRNNSVSKQPSKVNELTSTTKENQFKGIATRGGESQPTQILIRFPNGERREQSFLCTDKIQSIFTYIDSLGLQGIGNYRLVSNFPRRVYGVDQMRMTLKDAGLHPKASLFLEPV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00346 391 SMART ubx_3 306 390 IPR001012 GO:0005515
Bva05g00346 391 SMART 45neu3 70 196 IPR006577 -
Bva05g00346 391 MobiDBLite consensus disorder prediction 257 297 - -
Bva05g00346 391 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 390 - -
Bva05g00346 391 MobiDBLite consensus disorder prediction 263 297 - -
Bva05g00346 391 Coils Coil 219 239 - -
Bva05g00346 391 CDD UBX 317 389 - -
Bva05g00346 391 Gene3D Glutaredoxin 68 204 - -
Bva05g00346 391 SUPERFAMILY Ubiquitin-like 308 390 IPR029071 -
Bva05g00346 391 SUPERFAMILY Thioredoxin-like 63 204 IPR036249 -
Bva05g00346 391 Gene3D - 309 390 - -
Bva05g00346 391 Pfam UBX domain 312 389 IPR001012 GO:0005515
Bva05g00346 391 CDD UAS 91 201 - -
Bva05g00346 391 ProSiteProfiles UBX domain profile. 310 388 IPR001012 GO:0005515
Bva05g00346 391 PANTHER FAS-ASSOCIATED PROTEIN 8 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00346 Bva-Chr5 1713811 1715729 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00346 K18726 - gmx:100775212 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00346 05 1713811 1715729 Bva05g00346 05 1713811 1715729 ECH