Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva05g00328 | ATGGAGTCCACTCTAGTGATCAAGGTCAAATATGGAGATATGCTCAGGCGCTTTAATGCTCGTGTAGATGAGAACAACCAACTGGATCTCGACATGGTTGGCTTGAGAGCCAAgatactttctctttttaatctACCTACTGATGCAAATCTTTTGCTGAGATATGTTGATGAAGATGGTGATTTGGTGACCCTTGTGGATGATGATGATCTGCATGATGTGATGCTGCAAGAGTTAAAATTCTTGAGGATTGATGTTCACATGAGTAGTGACAATGGTGGTAAGTCAACTGCTAGGTGTAGTGGAAGTTCCACCCCTTTGAGATCTCCTCGTGTCAGAGATCCAATTCTAAGTGGCAATGCTGATGTTTTGAAGTCTGTGCCGGATCCCATTCGTGAGGTTTTGTCTAATATATCACTTGATTTGGCTTCAAAAGCTGCATTATCAAGTCCAGTGCTTGCTACTCTCGTGGATTGTGTTTCTAAAATCGGACAATCCTTGCTAAATTCTGATTCTCAGCCTCAGGTTGCAGCTGGTCCAAGCTCAAAAGATGCTGTTCCCTTGAATGTTGTTGCTTCTGCAGGAAGTTCGCAGACTGTAGCCTTGCACCAAAATTCCAATATCACTCAACAGGTGGAGGCTGGAAATATAACTAGAGGCGTAAGGGCACCAGTTGCCCTTGTTGATCTCAATGCTCCCCCATCCGATCCCAATTCATCTCAATCCACATACGTGAATGCTGCACCAAATTTGTCAGCAGTCTCTGATGGTGATGTCAGAAAGGGAAGGATAGCTACTGATGATAGCTCTAACAGCAAGGGTGATAGTTCTGTGGCATCCACTGGCCGTGCAGTTCCTAGTAACAGCTCTGCTCAGACTATTGCAAAGGATTATAGTCCTTCTGTTGAATGTCCTGTTTCTGGGACGTATTTTATTGATTCAGTAGCACCCTCTCTTGGGAATCATCGTGTTCATCCATTTAAGAGGAGTCATAATCACACTGAGGCCATGTGCGGTATGTTCCATGAGGGTGTTGGATGTGATGGATGTGGTGTTTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTgaaagaaaattatgaccTCTGCGGCATCTGCTTCAATGAAATGGGTAACGAGTCTGATTATATCAGAATTGACCGCCCTGTGCCTGTTCGGGCTCCACGACCGTTCAAGGGTTTATATGAACATCCACCTTGGGTTGGACCTCCAACCTTACCACATGTCCTTAGAGTGGGTGGTATGAAGCATGTACGACCCAAGCTAGATAGCCGGTTCATTTTGGATGTCAATGTCGTAGATGGTACAATGATGGCTCCATCTACTGTCTTTACAAAGATTTGGCGGATGCACAACAATGGCACTATAGTGTGGCCCAAGGGAACTCAACTTGTTTGGATTGGAGGAGACAAATTTAGTGACTTTTGTTCAGTTGACTTGGAGATTCCTGTGGATGGTGTACCTGTGGACAAGGAAATTGACATTGCTATTGACTTTAGAGCACCTAAATCTCCTGGTCGATATATTTCATATTGGAAGATGGCATCACCTTCTGGTAAAAAATTTGGTCAACGTGTTTGGGTTCTTATACAGGTTGGTGCTTCTCTCAAGGAGTCATTTTGTGATAGCTCTCAGGGTCTGAACTTGAACATTCCCCTTGTTGGCAGTTGCTCTAAAGGGCCtgatgttataaatattaatgtgcAACCTATACCTATTTTGGATGACGTTTTCCTTCAACCCCATAATCCTAATGCTCTCCCTGAGCCTGTCAAACAAATGGTTGTTGAGCAAACTGGGCAAGAGCTTGAAAATGACTTACCTATAAATGACACTACACTCGTCGGCCTTGGTGCCTCACCTGCTGTGTCACCTCCATCGATTTCTTATCCCATTATTGATTTCTCTGAAATAGCCCCAGCTGTTATATTTAATCCACAGTCTTCGGTTGTTGATGCATCGTCATCTTCTCCCACGGTTGAAGTAAATAATCCTGTTGAGGATACTCTCCTTAAGGAACTTGAAGAGATGGGTTTTAAGCAGGTTGATTTGAACAAAGAGATCTTGAGGATGAATGAGTATAATCTGTTGCAGTCAGTCGATGATCTTTGTGGTGTTTCTGAATGGGACCCCATCCTCGAGGAGTTAAAAAGAGATGGGTTTCTGCGATG | 2195 | 0.4287 | MESTLVIKVKYGDMLRRFNARVDENNQLDLDMVGLRAKILSLFNLPTDANLLLRYVDEDGDLVTLVDDDDLHDVMLQELKFLRIDVHMSSDNGGKSTARCSGSSTPLRSPRVRDPILSGNADVLKSVPDPIREVLSNISLDLASKAALSSPVLATLVDCVSKIGQSLLNSDSQPQVAAGPSSKDAVPLNVVASAGSSQTVALHQNSNITQQVEAGNITRGVRAPVALVDLNAPPSDPNSSQSTYVNAAPNLSAVSDGDVRKGRIATDDSSNSKGDSSVASTGRAVPSNSSAQTIAKDYSPSVECPVSGTYFIDSVAPSLGNHRVHPFKRSHNHTEAMCGMFHEGVGCDGCGVYPITGPRFKSKVKENYDLCGICFNEMGNESDYIRIDRPVPVRAPRPFKGLYEHPPWVGPPTLPHVLRVGGMKHVRPKLDSRFILDVNVVDGTMMAPSTVFTKIWRMHNNGTIVWPKGTQLVWIGGDKFSDFCSVDLEIPVDGVPVDKEIDIAIDFRAPKSPGRYISYWKMASPSGKKFGQRVWVLIQVGASLKESFCDSSQGLNLNIPLVGSCSKGPDVININVQPIPILDDVFLQPHNPNALPEPVKQMVVEQTGQELENDLPINDTTLVGLGASPAVSPPSISYPIIDFSEIAPAVIFNPQSSVVDASSSSPTVEVNNPVEDTLLKELEEMGFKQVDLNKEILRMNEYNLLQSVDDLCGVSEWDPILEELKRDGFLR | 731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva05g00328 | 731 | SUPERFAMILY | CAD & PB1 domains | 4 | 76 | - | - | |
| Bva05g00328 | 731 | MobiDBLite | consensus disorder prediction | 229 | 292 | - | - | |
| Bva05g00328 | 731 | SMART | PB1_new | 4 | 89 | IPR000270 | GO:0005515 | |
| Bva05g00328 | 731 | Gene3D | - | 1 | 88 | - | - | |
| Bva05g00328 | 731 | MobiDBLite | consensus disorder prediction | 269 | 292 | - | - | |
| Bva05g00328 | 731 | MobiDBLite | consensus disorder prediction | 91 | 112 | - | - | |
| Bva05g00328 | 731 | Pfam | PB1 domain | 5 | 77 | IPR000270 | GO:0005515 | |
| Bva05g00328 | 731 | PANTHER | OVARIAN CARCINOMA ANTIGEN CA125-RELATED | 1 | 186 | - | - | |
| Bva05g00328 | 731 | Pfam | Ig-like domain from next to BRCA1 gene | 439 | 540 | IPR032350 | - | |
| Bva05g00328 | 731 | CDD | NBR1_like | 428 | 540 | IPR032350 | - | |
| Bva05g00328 | 731 | Gene3D | - | 334 | 388 | IPR043145 | - | |
| Bva05g00328 | 731 | SUPERFAMILY | RING/U-box | 336 | 392 | - | - | |
| Bva05g00328 | 731 | SMART | zz_5 | 341 | 386 | IPR000433 | GO:0008270 | |
| Bva05g00328 | 731 | MobiDBLite | consensus disorder prediction | 233 | 250 | - | - | |
| Bva05g00328 | 731 | CDD | UBA_NBR1 | 674 | 712 | - | - | |
| Bva05g00328 | 731 | Gene3D | - | 670 | 719 | - | - | |
| Bva05g00328 | 731 | MobiDBLite | consensus disorder prediction | 91 | 108 | - | - | |
| Bva05g00328 | 731 | ProSiteProfiles | Zinc finger ZZ-type profile. | 342 | 392 | IPR000433 | GO:0008270 | |
| Bva05g00328 | 731 | PANTHER | PROTEIN JOKA2 | 277 | 729 | - | - | |
| Bva05g00328 | 731 | PANTHER | PROTEIN JOKA2 | 1 | 186 | - | - | |
| Bva05g00328 | 731 | Gene3D | Immunoglobulins | 424 | 544 | IPR013783 | - | |
| Bva05g00328 | 731 | PANTHER | OVARIAN CARCINOMA ANTIGEN CA125-RELATED | 277 | 729 | - | - | |
| Bva05g00328 | 731 | Pfam | Zinc finger, ZZ type | 342 | 377 | IPR000433 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva05g00328 | Bva-Chr5 | 1593810 | 1598161 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva05g00328 | K17987 | - | qsu:112012186 | 758.444 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva05g00328 | 05 | 1593810 | 1598161 | Bva05g00328 | 05 | 1593810 | 1598161 | ECH |