Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00312 ATGGGTGGATCACATTCAAAACGACGAAGCTCGAGGCAACGTTCAAGCATAAGTTCCAATTCATATTCGTGGAACTATCCTCAATCACAATATGGAAATGGGCAAGAAAGCCACGACCATGCATCTCAGCAGACTGGGCTTCCATCTCAGAGCAATGGAGGTGGTCGTGTTTCAGAACCAAAAAAGAGGTTAGAGAGGAAGTATTCAAGGATAGAGGACAATTATAATAGCTTGGAGCAGGTAACTGAGGCTCTAGCACACGCTGGCTTAGAGTCTTCCAATCTAATCGTTGGTGTTGATTTCACCAAAAGCAACGAGTGGACagGTGCACGGTCATTCCAAAGGAGGAGCCTCCATCACTTTGGCAATGAACAAAACCCTTATGAACAAGCAATATCGATTATCGGAAAAACCTTATCTTCCTTTGACGAGGATAACCTAATTCCATGTTTTGGCTTTGGAGATACTTCAACACATGACCAAGAAGTTTTCAGTTTCTATCCGGATGAAAGATTTTGTCAGGGATTTGAAGAAGTGTTGAGTCGATATAGAGAATTGATCCCTCAGTTAAAGCTTGCAGGACCAACATCATTTGCCCCAATCATTGAAATGGCAATAACTATAGTTGAGCAAAGTGGTGGCCAATACCATGTGTTATTAATCATAGCGGATGGGCAGGTGACAAGAAGTGTTGACACTGAACGAGGTCACTTAAGCACACAAGAAAAGCAAACCGTTGAAGCTATTGTGAAAGCAAGATATGAATATCCCTTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCATGGGACATGATGAGAGAATTTGATGATAACATCCCATCCCGGACCACCTTTGATAATTTCCAGGCATGTACCTTCTCATTCGTGAATTTTACTGAAATAATGTCAAAAAATGTGGATCGTTCCAGAAAGCAAGCAGAATTCGCACTTTCTGCTCTGATGGAAATACCCTCCCAGTATAAGGCAACACTAGAACTGAATATATTGGGTGCTCGTAGAGGAAAGGGTATAGACAGGATTCCTCTTCCACCGCCTCTATATGGTGCAGCATCTTTCAACACCTCAAAAGCTTCCCGTTCAACCAGTTTTCGTCGAGACCCTCCAAGTTCCACGTCAGATAATCACCTTTGTCCCATATGCATCACCAATCCTAAAGACATGGCCTTTGGTTGTGGACACGAGACATGCTGTGATTGTGGACAAGACCTTCCATTATGCCCCATTTGCAGGATTACCATTGATACAAGAATTAAActttatta 1286 0.4238 MGGSHSKRRSSRQRSSISSNSYSWNYPQSQYGNGQESHDHASQQTGLPSQSNGGGRVSEPKKRLERKYSRIEDNYNSLEQVTEALAHAGLESSNLIVGVDFTKSNEWTGARSFQRRSLHHFGNEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDTSTHDQEVFSFYPDERFCQGFEEVLSRYRELIPQLKLAGPTSFAPIIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTERGHLSTQEKQTVEAIVKARYEYPLSIILVGVGDGPWDMMREFDDNIPSRTTFDNFQACTFSFVNFTEIMSKNVDRSRKQAEFALSALMEIPSQYKATLELNILGARRGKGIDRIPLPPPLYGAASFNTSKASRSTSFRRDPPSSTSDNHLCPICITNPKDMAFGCGHETCCDCGQDLPLCPICRITIDTRIKLY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00312 428 Coils Coil 61 81 - -
Bva05g00312 428 CDD RING-HC_RGLG_plant 384 428 IPR045317 GO:0061630|GO:0070534
Bva05g00312 428 SMART VWA_4 92 304 IPR002035 -
Bva05g00312 428 Pfam Copine 117 337 IPR010734 -
Bva05g00312 428 SUPERFAMILY vWA-like 94 277 IPR036465 -
Bva05g00312 428 PANTHER COPINE FAMILY PROTEIN 1 1 428 - -
Bva05g00312 428 MobiDBLite consensus disorder prediction 1 64 - -
Bva05g00312 428 ProSiteProfiles Zinc finger RING-type profile. 385 418 IPR001841 -
Bva05g00312 428 PANTHER RING-FINGER PROTEIN 1 428 - -
Bva05g00312 428 MobiDBLite consensus disorder prediction 13 56 - -
Bva05g00312 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 428 IPR013083 -
Bva05g00312 428 SUPERFAMILY RING/U-box 376 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00312 Bva-Chr5 1525887 1528741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00312 K16280 - tcc:18604989 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00312 05 1525887 1528741 Bva05g00312 05 1525887 1528741 ECH