Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva05g00257 | ATGGAAAGCTCGTCTGCGCAGCCAACCGATACTAATCCATCGCCTTCTGGCGCTTCTCAATTCCTTACCAATCTTCCTTCCCGGGGCCTCTTCTCATCCACCGTTATTTCTTCAAATCCGGGTGGGATGCGGGTTTATATATGCGATCATAATACTTCCCCACCAGATGACCAACATATCAAGACGAACCAACAGAACATACTGATTAGATCACTTACACTCAGGAAACAAAAGGGTGATTCCAGTTCAAAAGATGGAACTGAGGGTTCAAGAAAGAGGGTTGCAGAGAAGGTTCTGGATAGCAGAGCTTCAGCTAAGAGAACAAATAATCAAGTAAACTCTCGACAAGAGGGATCAAGCACTCAAACATCTAACAGGGATTTCCAGAGCTTGACTGTAGAGAGGCTTCGCGCTCTCTTGAAAGCGAAAGGTCTTTctgttaaaggaaaaaagGACGAACTTATTGCACGTCTAAAAGGTGCAAATGGTTG | 491 | 0.4358 | MESSSAQPTDTNPSPSGASQFLTNLPSRGLFSSTVISSNPGGMRVYICDHNTSPPDDQHIKTNQQNILIRSLTLRKQKGDSSSKDGTEGSRKRVAEKVLDSRASAKRTNNQVNSRQEGSSTQTSNRDFQSLTVERLRALLKAKGLSVKGKKDELIARLKGANG | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva05g00257 | 163 | Pfam | Det1 complexing ubiquitin ligase | 21 | 78 | IPR018276 | - | |
| Bva05g00257 | 163 | PANTHER | DET1- AND DDB1-ASSOCIATED PROTEIN 1 | 1 | 161 | IPR033575 | GO:0032434 | |
| Bva05g00257 | 163 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Bva05g00257 | 163 | PANTHER | DET1- AND DDB1-ASSOCIATED PROTEIN 1 | 1 | 161 | - | - | |
| Bva05g00257 | 163 | SMART | sap_9 | 128 | 162 | IPR003034 | - | |
| Bva05g00257 | 163 | SUPERFAMILY | SAP domain | 122 | 159 | IPR036361 | - | |
| Bva05g00257 | 163 | Pfam | SAP domain | 128 | 160 | IPR003034 | - | |
| Bva05g00257 | 163 | MobiDBLite | consensus disorder prediction | 71 | 129 | - | - | |
| Bva05g00257 | 163 | MobiDBLite | consensus disorder prediction | 77 | 103 | - | - | |
| Bva05g00257 | 163 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Bva05g00257 | 163 | ProSiteProfiles | SAP motif profile. | 128 | 162 | IPR003034 | - | |
| Bva05g00257 | 163 | Gene3D | SAP domain | 104 | 162 | IPR036361 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva05g00257 | Bva-Chr5 | 1249771 | 1253219 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva05g00257 | - | - | aprc:113850031 | 247.669 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva05g00257 | 05 | 1249771 | 1253219 | Bva05g00257 | 05 | 1249771 | 1253219 | ECH |