Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00227 ATGGATCTTATTCACAGTTTCTTGAACCTAATTGCTCCTccatttactttcttttccctttgcCTTTTCTTACCACCCTATTGGGCTTTCAAGTCCTTCTTCTCTATCTTAAACTCCGTCTTCTCTGAAAATGTGGCTGGCAAGGTTGTTCTCATTACCGGTGCTTCCTCTGGCATTGGCGAGCATTTGGCATACGAGTATGCTAAAAGAGGTGCTTTTCTAGCACTTTGTGGGCGAAGGGAGAATTCACTGCGAGAAGTTGCAGACAGAGCTCGTGAATTTGGATCTCCagatgttattatcatgcgtGCAGATGTTTCCAAGCTTGAAGACTGTAGCCGAATAGTTGATCAGACTCTCCATCATTTCGGAAGATtgGACCATCTGGTAAATAATGCAGCAATGAGCACCTTCAACTTGTTTGAAGAAATAACTGATATCACCAATATGAGACCCATAATGGAAACAAACTTCTGGGGCTCCGTCTACACAACCCGTTTTGCTTTACCACACCTCAGAAGAAGCAAAGGCAAAATCGTTGAAATGTCGTCGGCTGATTCTTGGCTACCCGCACCCAGAAGGAACATATATTGTGCAAGCAAAGCAGCACTGGTGATCTTGTACGAGACATTGAGGGTTGAGGTTGGGCCCGACGTGGATATTACAATAGTAACACCCGGTCACATAGAATCTGAAATGACGAAAGGCAAGTTCTTAATGCCAGAAGGCAAGTTGGAGGTAGACCAAGATTTGAGAGATGTTGAAATCAGCGCAACACCGGTGGTTTCAGTGAGTGAGTGTGCCAAATCAATCATCAATGGTGTGCTGAGGGGAGATAGGTACGTGACGGTGCCGTCATGGTTCAGAATGACTTATGCGTTGAAGGTGTTGTGCCCTGAGTTGGTGGAATGGACCCTCAGATTCTTGTATGTAACCGCACCGGGAATTGCAGCAACCGAAGCATACAGCAAGAAGATTCTGGACACCACTGGAGTCAAGAAGCTCTTGTATCCCCAATCCATCCAATCTCCAGAGGTCAAGACAGATTG 1049 0.4395 MDLIHSFLNLIAPPFTFFSLCLFLPPYWAFKSFFSILNSVFSENVAGKVVLITGASSGIGEHLAYEYAKRGAFLALCGRRENSLREVADRAREFGSPDVIIMRADVSKLEDCSRIVDQTLHHFGRLDHLVNNAAMSTFNLFEEITDITNMRPIMETNFWGSVYTTRFALPHLRRSKGKIVEMSSADSWLPAPRRNIYCASKAALVILYETLRVEVGPDVDITIVTPGHIESEMTKGKFLMPEGKLEVDQDLRDVEISATPVVSVSECAKSIINGVLRGDRYVTVPSWFRMTYALKVLCPELVEWTLRFLYVTAPGIAATEAYSKKILDTTGVKKLLYPQSIQSPEVKTD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00227 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 310 IPR036291 -
Bva05g00227 349 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 341 - -
Bva05g00227 349 PANTHER RETINOL DEHYDROGENASE-RELATED 1 341 - -
Bva05g00227 349 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Bva05g00227 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Bva05g00227 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Bva05g00227 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Bva05g00227 349 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Bva05g00227 349 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Bva05g00227 349 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Bva05g00227 349 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Bva05g00227 349 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Bva05g00227 349 Pfam short chain dehydrogenase 48 236 IPR002347 -
Bva05g00227 349 Gene3D - 34 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00227 Bva-Chr5 1114484 1116074 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00227 37 253 Acyl Lipid Metabolism Gene Families AT3G12800 30.342 3.88e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00227 K22418 - egr:104416667 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00227 05 1114484 1116074 Bva05g00227 05 1114484 1116074 ECH