Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00185 ATGGGAAACTGCTGCTCCGACGTTGCCAGAGGTCGTGCGACCATCGGCGGAACTGCTGGCACCGTACACAATCCGGCATACGCTGCGAATGATGCAGTGGATAACTTCCTCAAGTCTCGCGGCTACTACGGCCTCTTCTCTCAGATTGAGTTATCGTTTTCCGCTTCAGGCTTGCGCAACCGAGAAGTGCTCTCAAAGAGCGATCCTATGATGGTTCTTTATGCAAGAGGGAAAGAAGGAGCACTTGAGGAGATCGGACGCACCGAAGTGGTTCTGAATTCATTGAATCCCATGTGGATCACTAAACacacttttatttatcattttgagGTTGTTCAAGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCATAATGTAGATGTAAAGATGCTCAAGCTAGAAGCGCAGCAGTTTCTTGGTGAGGCGACCTGTGCATTGTCCGAGTTAATTACAAAACCTGATCGAACATTGACACTAGATCTTCAAATAGAAGATTCTACCAGATCAACCCACTCTCAAAAGTGTGGGAAGCTCGTGGTGCATGCTGAGGAATGTGTTAACTTAAAGACTACAATGGAGATAATATTCAGGTGTTCAGATTTGGAATATGGGGATCTCTTCTCAAACTGTGATCCCTTTCTATTGATATCAAAAGTCGTGGAAGGTGGTACCCAAATTCCCATTTGTAAGACAGAAGTTATAAAGAATGATCTGCACCCTGTCTGGAAGTCTGTTTTCTTGAATATTCAACAAGTGGGAGGCAAGGACAGTCCATTAATAATAGAATGCTGTAACTTCCATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGCAGAATTAGAGAAGCTTTATTCTGGTGGCCAAggggaaaaattatttttgccaACTAGCAGTGGACATAATTATCATAACAAGTTGTTAAAGAGCCAGCTATATTTGGATACGTTTACTGAATGTGTCCAACATACTTTCCTGGATTATTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCTAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAAAAGGTAGTCTTGGAGGTTGGGGAGGTGTTGCAATTTTATGATACAGACAAGCGATTTCCCACTTGGGGATTTGGAGCACGACCGATTGATGGACCTATCTCACATTGTTTCAACTTGAATGGAAGTAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGACGGCATACATAAGTGCCCTCCTTAATGTTTCTCTTGCAGGGCCGACTCTTTTTGGACCCGTCATAACCAATGCTGCGCTGATTGCCAGCCATTCTGCAACAGATAGTGGACGAAAgtactttgttttattaataatcACGGATGGAGTGGTAACAGATCtccaagaaacaaaagatgCTCTGGTCAAAGCCTCTGACCTGCCATTATCAATCCTTATTGTTGGAGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCAGACAAGGGCGAGAGGCTTGAGAGTTCATCAGGACTGGTACCTTCGCGTGATATAGTCCAATTTGTTCCATTTCGTGATGTTCAAGATGGACATATTTCAGTAGTTCAGGCATTGCTAGCAGAATTACCTTCTCAATTTTTAACTTACATGCGGAGCAGAAAGATCCAACCGAATCTCTGGTCTTGTAAAAGACTGTA 1757 0.4132 MGNCCSDVARGRATIGGTAGTVHNPAYAANDAVDNFLKSRGYYGLFSQIELSFSASGLRNREVLSKSDPMMVLYARGKEGALEEIGRTEVVLNSLNPMWITKHTFIYHFEVVQVLVFRVYDVDTQFHNVDVKMLKLEAQQFLGEATCALSELITKPDRTLTLDLQIEDSTRSTHSQKCGKLVVHAEECVNLKTTMEIIFRCSDLEYGDLFSNCDPFLLISKVVEGGTQIPICKTEVIKNDLHPVWKSVFLNIQQVGGKDSPLIIECCNFHSNGKHDLMGKVQKSLAELEKLYSGGQGEKLFLPTSSGHNYHNKLLKSQLYLDTFTECVQHTFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQKVVLEVGEVLQFYDTDKRFPTWGFGARPIDGPISHCFNLNGSSHYCEVEGIQGIMTAYISALLNVSLAGPTLFGPVITNAALIASHSATDSGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGLVPSRDIVQFVPFRDVQDGHISVVQALLAELPSQFLTYMRSRKIQPNLWSCKRL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00185 585 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 164 IPR035892 -
Bva05g00185 585 SMART VWA_4 341 538 IPR002035 -
Bva05g00185 585 CDD vWA_copine_like 312 566 IPR010734 -
Bva05g00185 585 PANTHER COPINE 1 577 IPR045052 GO:0005544
Bva05g00185 585 ProSiteProfiles C2 domain profile. 165 301 IPR000008 -
Bva05g00185 585 Gene3D C2 domain 194 309 IPR035892 -
Bva05g00185 585 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Bva05g00185 585 Pfam C2 domain 198 294 IPR000008 -
Bva05g00185 585 Pfam C2 domain 54 156 IPR000008 -
Bva05g00185 585 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 294 IPR035892 -
Bva05g00185 585 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Bva05g00185 585 Gene3D C2 domain 52 193 IPR035892 -
Bva05g00185 585 SUPERFAMILY vWA-like 342 524 IPR036465 -
Bva05g00185 585 Pfam Copine 362 577 IPR010734 -
Bva05g00185 585 CDD C2B_Copine 195 290 IPR037768 -
Bva05g00185 585 CDD C2A_Copine 47 180 - -
Bva05g00185 585 SMART C2_3c 48 161 IPR000008 -
Bva05g00185 585 SMART C2_3c 180 297 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00185 Bva-Chr5 896488 902067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00185 - - gmx:100807801 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00185 05 896488 902067 Bva05g00185 05 896488 902067 ECH