Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00088 ATGGCGAAAAAGACGCAAGATGTGGTTCTTGGTGTGCCGTATTACGCCGGCGAAAACCTATACCAAGCTGGAGTGATCCCTCCCAACGCCGTCGTCGGCGACCCCAAGGGTATCCCGATCCACCAGACAATTTACAGGGACACTCCTGCTCCTTTTAACTGCGTCTACTGTGGTAATACTGGCGTTACCACCGTTAgATCAAAGCCAAGTCTGGCTGCGTATATAGGTTGCATGATGCCGATGATGCTTGGAGTGTGTTTTCTTTGTCCTTCGATGGACTGTCTCTGGCATAAGTATCATTACTGTCCTAGCTGCAATCAAAAGGTTGCTGACTTTGAGAAATCAGATCCCTGTGCCGTGATGGATCCTCCCCACTGGACACAGCAGAGCTTTGCGTTGCCTGGCTA 407 0.5037 MAKKTQDVVLGVPYYAGENLYQAGVIPPNAVVGDPKGIPIHQTIYRDTPAPFNCVYCGNTGVTTVRSKPSLAAYIGCMMPMMLGVCFLCPSMDCLWHKYHYCPSCNQKVADFEKSDPCAVMDPPHWTQQSFALPG 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00088 135 Pfam LITAF-like zinc ribbon domain 47 111 IPR006629 -
Bva05g00088 135 SMART litaf 49 114 IPR006629 -
Bva05g00088 135 PANTHER LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR 4 127 IPR037519 -
Bva05g00088 135 ProSiteProfiles LITAF domain profile. 34 114 IPR006629 -
Bva05g00088 135 PANTHER BNAC09G43880D PROTEIN 4 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00088 Bva-Chr5 441246 442624 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00088 K19363 - zju:107435224 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00088 05 441246 442624 Bva05g00088 05 441246 442624 ECH