Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00054 ATGTCTCAGGTTGATAACAGAAACTCTTCGGCGGCCAAGCGTGCTAGAACTGATGGTAGTCGTAGGGAAGATGATTGGACGTGCCCTAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGCAATATGCGTAATTGCACTCAACCGAGGCCAGTCGATCATAATTCGAAGTTTGCTGCAAAGCCTCAACAAGCTCCACAGGGTTATTCTTCCTCAGCTCCTTATGTAGATTCTGCTGCTCCCTCGTCAATATATCTTGGTGTCCCACCATACGGTTCTTCTATATTCAATGGGTCATCTATTCCTCCATATGATATTCCATTTTCTGGAGGTTCCGCATATCACTATAATTATACCAGTCGACTTTCTGCTGGCAGTCCTTATAGACCACTGCATTTATCTGGACCAACACCATACTCTAGTGGATCCATGATGGGAAATGGAGGCATGTATGGGATACCCCCACTGGTGGATCGGTATAGCCTTGGTTTGCCTATGGGACCTGGATCGATGGGCCCAAGGCCAGGATTTTTTCCAGATGACAAGTCTCAAAAAAAGACCTCAGATGAAGCTCGAGACAATGACTGGACATGTCCAAAATGTGGCAATATCAACTTCTCCTTCAGACCTGTCTGCAACATGAGAAAGTGCAACACACCAAAGCCCGGATCTCAGGTttcaaaatcagaaaaaaattctaAGCAAAAGATGCCAGAGGGGAGCTGGAAGTGCGAAAAATGTAATAACATAAACTTTCCATTCAGAACCAAGTGCAACAGACAGAATTGCGGTGCTGACAAGCCAGCCGAGGCAAAGAAATCTCCTTCACCAGCACCAGATCAAAATGATCAGTG 857 0.4481 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPVDHNSKFAAKPQQAPQGYSSSAPYVDSAAPSSIYLGVPPYGSSIFNGSSIPPYDIPFSGGSAYHYNYTSRLSAGSPYRPLHLSGPTPYSSGSMMGNGGMYGIPPLVDRYSLGLPMGPGSMGPRPGFFPDDKSQKKTSDEARDNDWTCPKCGNINFSFRPVCNMRKCNTPKPGSQVSKSEKNSKQKMPEGSWKCEKCNNINFPFRTKCNRQNCGADKPAEAKKSPSPAPDQNDQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00054 285 SUPERFAMILY Ran binding protein zinc finger-like 188 225 IPR036443 -
Bva05g00054 285 Gene3D - 14 53 - -
Bva05g00054 285 Gene3D - 184 225 - -
Bva05g00054 285 Gene3D - 228 271 - -
Bva05g00054 285 MobiDBLite consensus disorder prediction 220 242 - -
Bva05g00054 285 PANTHER ZINC FINGER PROTEIN 5 276 - -
Bva05g00054 285 SUPERFAMILY Ran binding protein zinc finger-like 233 270 IPR036443 -
Bva05g00054 285 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Bva05g00054 285 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Bva05g00054 285 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Bva05g00054 285 SUPERFAMILY Ran binding protein zinc finger-like 17 53 IPR036443 -
Bva05g00054 285 PANTHER OS08G0521400 PROTEIN 5 276 - -
Bva05g00054 285 MobiDBLite consensus disorder prediction 11 25 - -
Bva05g00054 285 MobiDBLite consensus disorder prediction 55 74 - -
Bva05g00054 285 MobiDBLite consensus disorder prediction 180 195 - -
Bva05g00054 285 MobiDBLite consensus disorder prediction 264 285 - -
Bva05g00054 285 MobiDBLite consensus disorder prediction 1 27 - -
Bva05g00054 285 SMART zf_4 241 267 IPR001876 -
Bva05g00054 285 SMART zf_4 24 50 IPR001876 -
Bva05g00054 285 SMART zf_4 195 221 IPR001876 -
Bva05g00054 285 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00054 Bva-Chr5 272447 276176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00054 191 272 EF-hand Containing Proteins AT1G55040 29.268 3.93e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00054 - - pmum:103322078 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00054 05 272447 276176 Bva05g00054 05 272447 276176 ECH