Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00038 ATGTCGATAGCGTCCTTTTCAATCCTCCGCCACCGCACGGTGACAGCTTCCGCCGCTTCTCTCCCATCTTTGAGTAACCTTCTTCGCCGCTTATCAAGCGTCCGCTGCTCCCCTATTGTTGCCCGGCAAGAAACCCCCAACAATGTCTCCAAGAAACCCCAACATCAACCCCCCAGCAAGAATCTCCTTAGAGCTAAACATACATTCAAGGACTACTCCTCTCTTGCTCCTGTTCTTTCTCGAGACGACAATCCTCCTCTCTCAGATTCCCAGGCGATCGGCACAGTTGCCGCTGCCCAGGCAAACTTCATGCGTGTCATCGTTCAACCTGTCCACTTCTACGAAGCTTCTGATAATTCTGGCCAAGGTCTGGAACCTTCTGAGCCTACAGTCGGATTGGAGCTGCTGTGTGTGGTAAGGGCGGTGTTGAAGAAGATAAAGAGAAGGGTGATGGTCGGTGACAAAGTGTTGGTAGGTTCTGTTGATTGGGTGGACCGGAGGGGTATGATTGAAAATGTATTCCAGAGAAAATCTGAGATTCTAGATCCTCCGGTGGCCAATGTGGACCATTTGCTGgtgtttttctctttggaaCAACCAAGGCTAGAGCCGTTTGTGCTCACTCGGTTTCTGGTAGAGGCCGAGTCAACTGGGATCCCGTTCACTCTAGCACTGAATAAGACAGAGCTTGTGGATAAGGAGACCCTGGCTTCTTGGAAGTCTAGGCTACGCAGTTGGGGTTATGAACCAGTATTGTGCAGTGTTGAATCCAGATATAACCTTGACCTCCTGGCGTTCAAGTTAAGAGATCAAACAACCGTGATTGTGGGGCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTTAGAAGCAACCACCGTGTTTCTGATGGTTCAGAAGGGGATAATTGGTTTGAACCTCCTGTTTTAGGCAGCAAGTGGTTTGAGGATCAGCGTGTGGGAGAGGTCTCTACAAGAAGTGGCAGAGGGAAGCATACTACTCGTCATGTGACTCTGCTTCCATTGGCTGAAGGGGGTTATCTTGCAGATACTCCTGGATTTAACCAGCCAAATTTACTGAAAGTGACGAAGCAATCTCTAGCACAAACTTTTCCAGAAatCCGGAATATGCTAAGCGCCAATGAGCCTTCAAAATGTTCATTCAACAATTGCTTGCATGTGGGTGAACCGGGGTGCATTGTGAAGGGGGATTGGGAAAGATATCCACTATATTTTCAACTTCTTGATGAAATTAGAATCAGAGAGGAGTTTCAGTTAAGGACGTTTGGAACCAAAAGAGAAGGTGATGTGAGGTACAAGGTGCGAGACATGGGTGTGCAGCAAGCAGAACCTCGGTTGGAACCTAAGAAACATAGGAGAAAATCTCGGAAGAGGATTAACCAGTCATTTTTAGACGAGTTAGATGAGCTGGATGACGACGATAATATGCTAGATGATGAGAATAATCCCGTTTTAAGGGCTTCgaagaatta 1496 0.4686 MSIASFSILRHRTVTASAASLPSLSNLLRRLSSVRCSPIVARQETPNNVSKKPQHQPPSKNLLRAKHTFKDYSSLAPVLSRDDNPPLSDSQAIGTVAAAQANFMRVIVQPVHFYEASDNSGQGLEPSEPTVGLELLCVVRAVLKKIKRRVMVGDKVLVGSVDWVDRRGMIENVFQRKSEILDPPVANVDHLLVFFSLEQPRLEPFVLTRFLVEAESTGIPFTLALNKTELVDKETLASWKSRLRSWGYEPVLCSVESRYNLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNHRVSDGSEGDNWFEPPVLGSKWFEDQRVGEVSTRSGRGKHTTRHVTLLPLAEGGYLADTPGFNQPNLLKVTKQSLAQTFPEIRNMLSANEPSKCSFNNCLHVGEPGCIVKGDWERYPLYFQLLDEIRIREEFQLRTFGTKREGDVRYKVRDMGVQQAEPRLEPKKHRRKSRKRINQSFLDELDELDDDDNMLDDENNPVLRASKN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00038 498 SUPERFAMILY Nucleic acid-binding proteins 93 177 IPR012340 -
Bva05g00038 498 CDD YjeQ_EngC 186 417 IPR004881 GO:0003924|GO:0005525
Bva05g00038 498 Gene3D - 171 360 IPR027417 -
Bva05g00038 498 Pfam RsgA GTPase 173 360 IPR010914 GO:0003924|GO:0005525
Bva05g00038 498 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 92 423 IPR004881 GO:0003924|GO:0005525
Bva05g00038 498 Gene3D Probable gtpase engc; domain 3 362 424 - -
Bva05g00038 498 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 80 482 IPR004881 GO:0003924|GO:0005525
Bva05g00038 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 416 IPR027417 -
Bva05g00038 498 ProSiteProfiles EngC GTPase domain profile. 186 356 IPR010914 GO:0003924|GO:0005525
Bva05g00038 498 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 177 358 IPR030378 GO:0005525
Bva05g00038 498 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 150 294 IPR004881 GO:0003924|GO:0005525
Bva05g00038 498 Coils Coil 498 498 - -
Bva05g00038 498 MobiDBLite consensus disorder prediction 478 498 - -
Bva05g00038 498 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 80 482 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00038 K06949 - qsu:112011642 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00038 05 191652 192386 Bva05g00038 05 191652 192386 ECH