Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03482 ATGGCGGATAATGCTTTAACGTATACTCAGCTTAAAAAGCTTGTCTTGTTTATCTTGTTCGTAATTCAATTTCTTGCACAAGTTTCGGTTtctgaaataatttttgaagagagatttgaagACGGCTGGCAAACTCGCTGGGTAAAATCTGACTGGAAAAGGACGGAAGGCAAAGCAGGTTCATTCAAGCACACGGCTGGAAAATGGGCTGGAGATCCAGATGATAAAGGTATTCAGACATCCAGTGATGCCAAACATTCTGCCGTCTCTGCAAAAATACCCGAATTTAGTAACAAGAATAGAACATTGGTCCTCCAGTATTCTATAAAGTTTGAGCAAGATATTGAGTGCGGTGGAGGTTACATAAAGCTCCTCTCTGGATTTGTCAATCAAAAGAAGTTTGGTGGTGATACTCCTTACAGTTTAATGTTTGGACCAGATATATGTGGAACACAGACAAAGAAGCTCCATGTCATACTCTCCTACCAGGGCCAAAATTACCCCATAAAGAAGGACCTGCAATGTGAAACTGACAAGTTGACTCATTTCTACACATTCATTCTCAGGCCCGATGCATCTTATAGTGTACTAGTTGATAATAGAGAAAGGGATTCTGGAAGCATGTACACTGATTGGGATATTCTTCCTCCACGAAAAATCAAAGTTGTCAATGCAAAAAAGCCTGCAGACTGGGATGACAGAGAATACATTGATGACCCTAATGATGTCAAACCTGAGGGATATGATTCGATCCCAGCTGAAATCCCTGACCCAAAAGCTAAAGagCCTGATAGCTGGGATGACGAGGAAGATGGTATATGGAAACCACCAAAGATACCAAATCCAGCATACAAAGGGCCATGGAAACGAAAGAAAATCAAGAATCCGAACTACAAGGGGAAGTGGAAAATTCCTTGGATAGATAATCCTGAGTTTGAAGATGACCCTGATCTTTATGTGCTGAAGCCTATCAAATATGTGGGGATTGAAGTTTGGCAGGTGAAAGGTGGTTCAGTTTTTGACAACGTTTTGATTTGTGATGATCCTGATTATGCAAAAAAAGTTGTGGATGAAGTTTTTGCAAATAGGGAGACTGAAAAGGAGGCTTTTGAGGAAGCAGAGAAAGTGAGAAAAGCACAAGAGGAGGAGGAAGCTCAAAGAGCGAGAGAAGAAGGGGAGAGGAGGAGACGAGAGAGAGGTCATGATCGACGTTACCGAGATAGATATAAAGACAGATACAAAAGGCATCGCCGTGattacttggatgattatcaTGATGAACTCTG 1286 0.402 MADNALTYTQLKKLVLFILFVIQFLAQVSVSEIIFEERFEDGWQTRWVKSDWKRTEGKAGSFKHTAGKWAGDPDDKGIQTSSDAKHSAVSAKIPEFSNKNRTLVLQYSIKFEQDIECGGGYIKLLSGFVNQKKFGGDTPYSLMFGPDICGTQTKKLHVILSYQGQNYPIKKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKVVNAKKPADWDDREYIDDPNDVKPEGYDSIPAEIPDPKAKEPDSWDDEEDGIWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNVLICDDPDYAKKVVDEVFANRETEKEAFEEAEKVRKAQEEEEAQRAREEGERRRRERGHDRRYRDRYKDRYKRHRRDYLDDYHDEL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03482 428 MobiDBLite consensus disorder prediction 232 287 - -
Bva04g03482 428 PRINTS Calreticulin signature 326 346 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 PRINTS Calreticulin signature 293 312 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 PRINTS Calreticulin signature 112 130 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 PRINTS Calreticulin signature 227 240 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 PRINTS Calreticulin signature 255 277 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 PRINTS Calreticulin signature 138 154 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 MobiDBLite consensus disorder prediction 370 403 - -
Bva04g03482 428 ProSitePatterns Calreticulin family signature 1. 110 125 IPR018124 GO:0005509
Bva04g03482 428 Gene3D - 32 389 - -
Bva04g03482 428 Pfam Calreticulin family 272 345 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 Pfam Calreticulin family 36 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 ProSitePatterns Calreticulin family signature 2. 142 150 IPR018124 GO:0005509
Bva04g03482 428 SUPERFAMILY P-domain of calnexin/calreticulin 213 328 IPR009033 GO:0005509|GO:0005515
Bva04g03482 428 PANTHER CALRETICULIN-3 9 428 - -
Bva04g03482 428 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 230 IPR013320 -
Bva04g03482 428 PANTHER CALRETICULIN AND CALNEXIN 9 428 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 PIRSF Calreticulin 11 421 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bva04g03482 428 Gene3D Calreticulin/calnexin, P domain 206 326 IPR009033 GO:0005509|GO:0005515
Bva04g03482 428 MobiDBLite consensus disorder prediction 255 275 - -
Bva04g03482 428 Coils Coil 362 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03482 Bva-Chr4 27533730 27540074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03482 10 348 Miscellaneous Gene Families AT5G61790 34.606 9.24e-62 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03482 K08057 - qsu:111984814 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03482 04 27533730 27540074 Bva04g03482 04 27533730 27540074 ECH