Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03467 ATGCTCAATTCAGTCATTACTTCCTCTCGTTTTCACTTTCCCAGATTTCTATCTCGTTGGCACCGATCATCGTCGCCCTTCCCTCATTCTGATTCTACCAACGTTTATGCTCTTCATGCAAACTCTTTCAAGAACGGTTCTCTTCAGACTTCAAACTTGAGTAGTTACCTGTTGAACTTGTACGTTAAATCCAACAACTTGGACCACGCCCACAAgctgtttgatgaaattctaCTTAGAAACACCCAAACGTGGACCATTCTTATATCAGGTTTTGCTCGAATTGGTTCATCAGATATGGTCTTTAACCTTTTCAGAGAAATGCGTGTAGCTGGCGCTCTTCCAAATCACTTTACATTATCTAGTGTCTTCAAGTGTTGTTCAAGAGTAAGCAATCTTCTCTTGGGTAAGGGAGTCCATGCTTGGATACTGCGAAATGGTATTGTTGGAGATATCGTGTTGAACAACTCTcttcttgatttttatttgaaatgcaGCGTTTTTGAATACGCAGAAAGATTATTTGAGTTGATGAAAGAAAGGGACCTTGTATCATGCAACATAATGATTGCTGCATATATCCGTGGAGGAGATGTTGAAAAATCTCTAGACTTTTTCAGGAATTTGCCTTACAAGGATGCTGTCAGTTGGAATACAATCATAGATGGCCTTATGCAATGTGGTTGTGAAAGATATGCTTTCGAACAACTCTATGATATGGTTCGAAGTGGGACTGAGctgtcttcattttctttttccatagCTCTTATGTTGGCTTCTTCTCTAACTCATATCGAGCTCGGGAGACAACTTCATGAGCGTGTCCTAAAATTTGGCATTAACAGTGATGGGTTTATAAGGAGTTCACTTGTAGAGATGTATTGCAAATGCGGGAGAGTGGACAAGGCATCTCTAGTTCTCAGAGAAGTACCTTTGGATTTTCTGAGCATACAAAATTCTGGGGTTAGGTGCGAGGCTCCCGCAGCTGAAATCGTTTCGTGGAGTTCAATGGTTTCTGGCTATATTTTGAATGGCAAGTATGAAGATGGTTTAAAATCTTTCAGGTTTATGGTTCGCAAACAGGTTGCAGTGGATATTCTGACTATCACGAGCATAATTTCTGCTTGTACTAATGCTGGAACTTTCGAATTTGGTCTACAGATACATGCCTATATTCAGAAAATTGGACATAGAATGGATGCTTATGTTGGTTCCTCGTTAATTGATATGTATTCCAAATCTGGAAGCTTGGATGATGCCTGGATGATTTTCAGGCAAATCAACAGTACAAATGTTGTGTTATGGACTTCTATGATATCAGGCTGTGCATTACATGGTCAAGGGAGGGAGGCTGTTCGCCTTTTCGATGAAATGGTGAGTCAGGGTATAGTGCCAAATGAGGTTACCTTTCTTGGGGTTTTAAATGCATGCAGCCATGCAGGGCTGCTAGATGATGGGTGTAGATATTTCAGGATGATGAAAGATGTTTTTTGCATTGATCCTGGAGTTGAACACTTTACTTCTATGGTTGATCTTTATGGTAGAGCAGGTCACTTAACTGAGACAAAGGAGTTTATCTTTGCAAATGGTATCTCGCACCTGAGTGCTGTATGgaaatcatttttatcatCTTGTCGACTTCATAAAAACGTTGAGATGGGAAAGTGGGTTTCTGAAATCCTGCTTCAAATCTCACCATCTGATGCAGgaacttatattttatcttctaaCATGTGTGCTGCTAACCATAGATGGGACGAGGCCGCCAGGGTAAGGACTTTAATGCATCAGAAAGGGATTAAGAAGCAGCCTGGTCAATCTTGGATGTA 1829 0.3893 MLNSVITSSRFHFPRFLSRWHRSSSPFPHSDSTNVYALHANSFKNGSLQTSNLSSYLLNLYVKSNNLDHAHKLFDEILLRNTQTWTILISGFARIGSSDMVFNLFREMRVAGALPNHFTLSSVFKCCSRVSNLLLGKGVHAWILRNGIVGDIVLNNSLLDFYLKCSVFEYAERLFELMKERDLVSCNIMIAAYIRGGDVEKSLDFFRNLPYKDAVSWNTIIDGLMQCGCERYAFEQLYDMVRSGTELSSFSFSIALMLASSLTHIELGRQLHERVLKFGINSDGFIRSSLVEMYCKCGRVDKASLVLREVPLDFLSIQNSGVRCEAPAAEIVSWSSMVSGYILNGKYEDGLKSFRFMVRKQVAVDILTITSIISACTNAGTFEFGLQIHAYIQKIGHRMDAYVGSSLIDMYSKSGSLDDAWMIFRQINSTNVVLWTSMISGCALHGQGREAVRLFDEMVSQGIVPNEVTFLGVLNACSHAGLLDDGCRYFRMMKDVFCIDPGVEHFTSMVDLYGRAGHLTETKEFIFANGISHLSAVWKSFLSSCRLHKNVEMGKWVSEILLQISPSDAGTYILSSNMCAANHRWDEAARVRTLMHQKGIKKQPGQSWM 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03467 609 Pfam E motif 548 609 IPR046848 -
Bva04g03467 609 PANTHER OS07G0578800 PROTEIN-RELATED 43 609 IPR045215 GO:0003723|GO:0009451
Bva04g03467 609 Pfam PPR repeat 57 78 IPR002885 -
Bva04g03467 609 Pfam PPR repeat 288 309 IPR002885 -
Bva04g03467 609 Pfam PPR repeat 215 244 IPR002885 -
Bva04g03467 609 Pfam PPR repeat 184 207 IPR002885 -
Bva04g03467 609 Pfam PPR repeat 156 182 IPR002885 -
Bva04g03467 609 Pfam PPR repeat 405 427 IPR002885 -
Bva04g03467 609 Pfam PPR repeat 332 361 IPR002885 -
Bva04g03467 609 Gene3D Tetratricopeptide repeat domain 406 609 IPR011990 GO:0005515
Bva04g03467 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Bva04g03467 609 Pfam PPR repeat family 431 478 IPR002885 -
Bva04g03467 609 Pfam PPR repeat family 81 128 IPR002885 -
Bva04g03467 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Bva04g03467 609 Gene3D Tetratricopeptide repeat domain 44 131 IPR011990 GO:0005515
Bva04g03467 609 Gene3D Tetratricopeptide repeat domain 132 259 IPR011990 GO:0005515
Bva04g03467 609 Gene3D Tetratricopeptide repeat domain 260 384 IPR011990 GO:0005515
Bva04g03467 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Bva04g03467 609 PANTHER OS07G0239600 PROTEIN 43 609 - -
Bva04g03467 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Bva04g03467 609 TIGRFAM PPR: pentatricopeptide repeat domain 84 116 IPR002885 -
Bva04g03467 609 TIGRFAM PPR: pentatricopeptide repeat domain 184 207 IPR002885 -
Bva04g03467 609 TIGRFAM PPR: pentatricopeptide repeat domain 433 467 IPR002885 -
Bva04g03467 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03467 Bva-Chr4 27473129 27476519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03467 57 609 Glycoside Hydrolase AT3G49170 31.655 1.65e-94 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03467 K23541 - gmx:102664309 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03467 04 27473129 27476519 Bva04g03467 04 27473129 27476519 ECH