Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03463 ATGTTGCCTGCATCTGCTAATGGGGTCACCGTCTccctcatttttctcttctttttagcAAATACTGTCTATTGCAAAGAAGCGACTTTGGTCCGTGGGGCAAATGGGTCCGCTGTGGCAGTGGCAGTGGCGAAGCCGATGATGCCCGCGAATGTGTTGGAGGCCGGCAAGATGGAGATAGCGATGATGATGAACGAGAGCAGAAGGAAGTTGGGCAGCTTTCAGATATGCGCACTGTGTACCTGTTGCGGTGGAGCTAAAGGTGTTTGCTTGCCGTCTCCATGTTGCTATGCCATCAATTGCAACATTCCCAATAGACCTTTTGGCTTCTGCTCCTTCACACCGAAGACCTTAAGAGAATTTTCAATCATGAGTTGGTGTACAATTGAGTCGGATCCCGGTGTATTTACGGAACTTATACAACATATGCAAGTAAAAGGAGTTCAGGTCGAGGAGCTGTATTCATTGGATCTTGACTCTCTCAACAGCCTTAGGCCTGTATATgggttgatttttcttttcaaatggCGGCCAGGGGAAAAGGATGAACGGATGGTTATAAAAGATCCGAACCCAAACTTGTTTTTTGCAAGCCAGGTAATTAATAATGCATGTGCAACCCAAGCAGTCTTGTCTATCCTTATGAATTCACCAAATATTGACATTGGTCCAGAGTTGACAAAGTTGAAAGAATTTACCAAGAATTTTCCTCCTGAATTAAAAGGTTTGGCTATCAATAATAGTGAAGCAATCCGTACAGCCCATAATAGTTTTGCAAGGCCTGAACCTTTTGTCCCTGAAGAGCAGAAGGTTGCTGGGAAGGATGATGatgtttatcattttataagtTATCTACCTGTGGATGGGTTACTATATGAGCTTGATGGATTAAAGGAGGGTCCTATTAGCCTTGGTCAGTGTTCTGGTGGGCAAGGTGATATTGAGTGGCTGAAAATGGTTCAACCTGTGATCCAGGAACGAATCGACAGGCACTCTCAAAGTGAGATAAGATTTAATCTCATGGCAATTATCAAGAACAGGAAAGAGATATATACGGCCGAGCTCAAGCAGCTCCAGAAGAGGAGGGAGCAGCTAACTGCATCCAAGTCAGAGAACAATGCTCTCTCCGAAGTGAATGCTAGGATCAAAGCTGCTACAGAGAAGATAGTGATGgaggaagaaaaattcaaaaattggaGAACAGAAAATATCCGTAGGAAACACAATTATATTCCCTTTCTGTTTAACTTCCTAAAAGTTCTGGCGGAGAAGAAGCAGTTGAAGCCTCTCATAGAGAAGGCCAAGCAAAAAACAAGCAGCCCTCAACGAAGAATTTA 1337 0.4144 MLPASANGVTVSLIFLFFLANTVYCKEATLVRGANGSAVAVAVAKPMMPANVLEAGKMEIAMMMNESRRKLGSFQICALCTCCGGAKGVCLPSPCCYAINCNIPNRPFGFCSFTPKTLREFSIMSWCTIESDPGVFTELIQHMQVKGVQVEELYSLDLDSLNSLRPVYGLIFLFKWRPGEKDERMVIKDPNPNLFFASQVINNACATQAVLSILMNSPNIDIGPELTKLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPEEQKVAGKDDDVYHFISYLPVDGLLYELDGLKEGPISLGQCSGGQGDIEWLKMVQPVIQERIDRHSQSEIRFNLMAIIKNRKEIYTAELKQLQKRREQLTASKSENNALSEVNARIKAATEKIVMEEEKFKNWRTENIRRKHNYIPFLFNFLKVLAEKKQLKPLIEKAKQKTSSPQRRI 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03463 445 Coils Coil 341 402 - -
Bva04g03463 445 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 128 145 IPR001578 GO:0004843|GO:0006511
Bva04g03463 445 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 199 216 IPR001578 GO:0004843|GO:0006511
Bva04g03463 445 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 163 175 IPR001578 GO:0004843|GO:0006511
Bva04g03463 445 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 275 286 IPR001578 GO:0004843|GO:0006511
Bva04g03463 445 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 291 301 IPR001578 GO:0004843|GO:0006511
Bva04g03463 445 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 124 437 - -
Bva04g03463 445 Pfam Ubiquitin carboxyl-terminal hydrolases 382 427 IPR041507 -
Bva04g03463 445 SUPERFAMILY Cysteine proteinases 125 346 IPR038765 -
Bva04g03463 445 Gene3D - 119 347 IPR036959 GO:0004843|GO:0006511
Bva04g03463 445 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 124 437 IPR001578 GO:0004843|GO:0006511
Bva04g03463 445 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 126 328 IPR001578 GO:0004843|GO:0006511
Bva04g03463 445 CDD Peptidase_C12_UCH37_BAP1 126 343 - -
Bva04g03463 445 Gene3D - 348 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03463 Bva-Chr4 27451588 27456489 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03463 K05610 - gmx:100792356 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03463 04 27451588 27456489 Bva04g03463 04 27451588 27456489 ECH