Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03440 ATGATCTCTGTGCAGGGAGACCATCGCCACCATCACCACCAGCCGCATCTGCATGGTTCTTCTGGGGTATCTCGCTCTCCCTTCACAGCTGATCGGGTAGAACCATTCTCTTTCAAGCCCGAGCCTGCATCGCTCAGTTCACTCCCATTACACGCTCATGATTCTAATGAAGTTGATGAAGATTTGCACTTATCTCTTGCGCATCAAATGTACAAGACTGGCAGTTATAAGCAAGCACTGGAGCATAGCAACACTGTCTATGAGAGAAGTCCGCTGCGCACTGACAACCTACTTCTTCTGGGTGCAATTTATTaccagTTACATGATTTTGCTATGTGTATtgcaaaaaatgaagaagcacTTCGAATTGAGCCACATTTTGCTGAGTGTTATGGGAACATGGCAAATGCATGGAAGgaaaaaggaaatattgaTCTTGCAATTCGTTACTATTTGATTGCGATTGAGCTTCGTCCCAATTTTGCTGATGCATGGTCAAACCTAGCTAGTGCATATATGCGCAAAGGAAGGCTCACTGAAGCAGCCCAATGTTGTCGTCAAGCACTTGCTTTAAATCCTTTAAtgGTCGATGCCCATAGCAACTTGGGGAATCTAATGAAAGCTCAAGGATTGGTGCAAGAAGCATACAGTTGCTACCTTGAGGCATTGCGCATTCAACCCACTTTTGCTATTGCATGGTCAAATCTTGCTGGTCTATTTATGGAGTCTGGTGATTTCAATAGAGCCCTTCAGTATTACAAGGAAGCTGTGAAACTTAAACCTTCCTTTCCAGATGCCTATCTGAACCTTGGCAATGTATATAAGGCTCTAGGGATGGCTCAAGAGGCTATTGCATGTTACCAACGTGCTCTTCAGACACGACCAAACTATGCTATGGCGTATGGTAATTTGGCTAGTACATGTTATGAGCAAGGCCAACTGGACATGGCGATTCTGCATTATAAACAAGCTGTTGCATGTGATCCAAGATTTTTGGAGGCTTACAATAATTTGGGTAATGCACTAAAAGATGTTGGCCGAGTGGAAGAAGCAATCCAGTGCTACAACCAATGCCTTGCATTACAACCCAACCACCCACAAGCGCTGACCAACCTTGGAAATATATACATGGAATGGAACAtggttgctgctgctgcttcttATTACAAGGCTACGTTGAGTGTAACCACTGGATTATCTGCTCCCTTTAACAATCTTGccataatttataaacagCAGGGGAATTATGCAGATGCCATATCATGCTACAATGAAGTTCTTCGCATTGATCCTTTGGCAGCTGATGGGCTTGTAAATAGGGGCAATACTTATAAGGAGATTGGTAGAGTTAGTGAAGCTATCCAAGACTATATACATGCAATTACTGTCAGGCCCACTATGGCTGAAGCCCATGCTAATTTGGCTTCTGCCTATAAAGATAGTGGACATGTAGAGGCTGCTATAAAGAGCTATAGACAGGCATTGATTCTTCGTCAAGACTTTCCAGAAGCAACTTGCAATCTTTTGCATACCCTTCAGTGTGTTTGCAGCTGGGAGGATCGTGATAAAATGTTCCATGAGGTTGAAGGGATCATCAGGAGGCAGATCAATATGTCAATCCTTCCTAGTGTCCAGCCTTTCCATGCAATAGCCTATCCACTGGATCCAATGCTTGCTCTAGATATCAGTCGGAAATATGCTGCTCACTGCTCCTTAATTGCATCTCGGTTTGCTATTCCTCCATTTAACCATCCTGCCCGTATTCCAATCAAGTGTGAGGGTGGATATGAGAGACTAAGGATTGGTTATGTGAGTAGTGACTTCGGTAATCACCCATTGTCGCACCTAATGGGATCTGTCTTTGGCATGCACAACCATAAGAATGTTGAGGTATTTTGCTATGCCTTGAGTCCAAATGATGGTAGTGAATGGAGACAGCGAATTCAGTCTGAAGCAGAACACTTTGTGGATGTATCTGCCATGTCATCAGATATGATAGCCAAAATGATTAATGAGGATAAGATACACATCCTTGTCAACCTTAATGGTTATACAAAGGGTGCCCgaaatgaaatatttgctATGCAGCCTGCTCCAATTCAAGTTTCTTATATGGGATTCCCTGGAACCACGGGGGCTACCTACATAGATTACTTGGTCACTGATGAGTTTGTTTCACCATTACGTTATGCGCATATCTACTCTGAAAAGCTCGTCCACCTTCCCCATTGTTACTTTGTAAATGATTATAAACAGAAAAATGAGGACGTGTTAGACCCAAAGTGCCAGACCAAACGATCAGATTATGGTCTTCCTGaggataaatttatatttgcatGCTTTAATCAGTTGTACAAGATGGATCCTGAAATACTCAATACATGgTGCAATATTCTTAAACGTGTACCCAACAGTGCACTTTGGCTCCTCAGATTCCCTGCCGCAGGAGAGATGCGACTGAGAGCATatgctgccgcacaagggGTGCAGCCAGATCAAATCATTTTAACAGATGTTGCCATGAAGAATGAGCATATTAGACGGAGTGCTTTGGCAGATTTATTTCTTGACACgCCATTATGTAATGCACATACAACGGGAACAGATATCTTATGGGCAGGTTTACCAATGATTACTCTGCCTCTTGAGAAAATGGCTACTAGAGTTGCTGGGTCACTCTGTCTTTCTACTGGACTTGGGGAGGAGATGATTGTTAGCGAcatgaAAGAGTACGAAGAGAGGGCTGTCTCTCTGGCTCTGAGTCTCCCGAAGCTTCAAGCTCTTACTAATAAGCTGAAAAGTGTTCGCATGACTTGCCCTCTATTTGACACAGCTCGCTGGGTAAGGAATCTTGAGAgaggatattttaaaatgtggaATTTGCATTGCTCCGGTCAACGTCCGCAGCATTTCAAAGTTACTGAGAATGATCTCGACTGTCCTTACGACAGCTA 2954 0.413 MISVQGDHRHHHHQPHLHGSSGVSRSPFTADRVEPFSFKPEPASLSSLPLHAHDSNEVDEDLHLSLAHQMYKTGSYKQALEHSNTVYERSPLRTDNLLLLGAIYYQLHDFAMCIAKNEEALRIEPHFAECYGNMANAWKEKGNIDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALALNPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMAQEAIACYQRALQTRPNYAMAYGNLASTCYEQGQLDMAILHYKQAVACDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLALQPNHPQALTNLGNIYMEWNMVAAAASYYKATLSVTTGLSAPFNNLAIIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSEAIQDYIHAITVRPTMAEAHANLASAYKDSGHVEAAIKSYRQALILRQDFPEATCNLLHTLQCVCSWEDRDKMFHEVEGIIRRQINMSILPSVQPFHAIAYPLDPMLALDISRKYAAHCSLIASRFAIPPFNHPARIPIKCEGGYERLRIGYVSSDFGNHPLSHLMGSVFGMHNHKNVEVFCYALSPNDGSEWRQRIQSEAEHFVDVSAMSSDMIAKMINEDKIHILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLRYAHIYSEKLVHLPHCYFVNDYKQKNEDVLDPKCQTKRSDYGLPEDKFIFACFNQLYKMDPEILNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAAAQGVQPDQIILTDVAMKNEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLSTGLGEEMIVSDMKEYEERAVSLALSLPKLQALTNKLKSVRMTCPLFDTARWVRNLERGYFKMWNLHCSGQRPQHFKVTENDLDCPYDS 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 169 234 IPR011990 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 332 365 IPR019734 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat region circular profile. 230 262 - -
Bva04g03440 984 SUPERFAMILY TPR-like 61 310 IPR011990 GO:0005515
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 133 168 IPR011990 GO:0005515
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 303 336 IPR011990 GO:0005515
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 472 574 IPR011990 GO:0005515
Bva04g03440 984 Pfam Tetratricopeptide repeat 128 160 IPR019734 GO:0005515
Bva04g03440 984 Pfam Glycosyl transferase family 41 515 753 IPR029489 -
Bva04g03440 984 Pfam Glycosyl transferase family 41 762 951 IPR029489 -
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 196 229 IPR019734 GO:0005515
Bva04g03440 984 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SEC ISOFORM X1-RELATED 19 983 - -
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 264 297 IPR019734 GO:0005515
Bva04g03440 984 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT 19 983 IPR037919 GO:0006493|GO:0016757
Bva04g03440 984 MobiDBLite consensus disorder prediction 1 26 - -
Bva04g03440 984 SMART tpr_5 468 501 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 128 161 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 230 263 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 434 467 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 94 127 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 366 399 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 196 229 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 298 331 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 332 365 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 264 297 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 162 195 IPR019734 GO:0005515
Bva04g03440 984 SMART tpr_5 400 433 IPR019734 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat region circular profile. 162 193 - -
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Bva04g03440 984 Pfam Tetratricopeptide repeat 403 431 IPR001440 GO:0005515
Bva04g03440 984 Pfam Tetratricopeptide repeat 162 193 IPR001440 GO:0005515
Bva04g03440 984 Pfam TPR repeat 240 278 - -
Bva04g03440 984 Pfam TPR repeat 307 346 - -
Bva04g03440 984 Pfam TPR repeat 441 482 - -
Bva04g03440 984 Gene3D Glycogen Phosphorylase B; 766 938 - -
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Bva04g03440 984 Gene3D - 593 765 - -
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 337 395 IPR011990 GO:0005515
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 50 132 IPR011990 GO:0005515
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 235 302 IPR011990 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 434 467 IPR019734 GO:0005515
Bva04g03440 984 SUPERFAMILY TPR-like 348 848 IPR011990 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat region circular profile. 400 431 - -
Bva04g03440 984 ProSiteProfiles TPR repeat region circular profile. 332 365 - -
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Bva04g03440 984 Gene3D Tetratricopeptide repeat domain 396 471 IPR011990 GO:0005515
Bva04g03440 984 ProSiteProfiles TPR repeat region circular profile. 264 296 - -
Bva04g03440 984 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03440 Bva-Chr4 27345085 27354758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03440 241 983 Glycosyltransferase AT3G04240 85.061 0.0 1362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03440 K09667 - gmx:100806661 1861.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03440 04 27345085 27354758 Bva04g03440 04 27345085 27354758 ECH