Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03211 ATGGGGACTGAAAATCCTGGTCGTCCAAGCTTTCCTGCAAGGCCTTCTGCCACGCCTTTTGCTGCTGGACAGACTATGTCACCTTTTTCATCAACTGGTCCCGTGGCTGGATCAGAGCCTCCTTCTTTCCGACCTACTCCTGCTGCTGCTTCCCAGACCACTTCACCATTTTCATCGTCTGGACCTGTAATTGGAACAGGGGCACCCAGTTCTAGACCTACGCCACCAGGTCGGTTTAATGATCCATCCGTTCCTCCCCCTCCAACATCCAATGTCCCATCTCCTGGTGGACCTTTCCAGCGTTTTCCAACACCTCATCTGTCCTCACCGGCTCAAGTAGTTCCTCTACGCAGTCCGTCCATGGGGCAACCATCACTTCAACCTTCTCCAGCTCAAACACCATCTTTTCCAGCATCCCTTCATCATCAGTCACATACACCTTTTGTTCCAATGGGGTCTCCCCCACAAAGTGCCACTTCTCCACCTCCTAGTTTGAATGTTCCTCCTCCTATGTCAGATTCGTCTTTTCCAGTACCTAGGCCCAATATTCAGCCATCTTTTCCCGGATATGCCCGCAAGCAGTCTGGTGCAGAAGTGCAAACTCCATCTATGCAGTCCTCTTTTCTGACAAATCAAGGAAATTATGTACCGGCCCTACCTGCAGCACCTTCACCATTTATGTCTCATCAAGGAGGCTATGTTCCACCGCCCCCTGTGGCTGCCCCACCAGGCATGCCACCAATGCAACAGCCAGGATCTGGACCTCCTATTGGTACGATTCAGGGGTTGGCAGAAGACTTCAGTTCACTTTCAATTCAAACTCGTCCTGGAACGATGGATGCAGTTATTGATGCTCATGAATTGCCGAGGCCTTTGGATGGTGATGTGGAGCCAAAATGTCTTGCTGAGATGTATACCATGAACTGCAATCCCAGATATCTACGGCTGACAACCAGTGCAATTCCTGGCTCACAGTCCTTAGCTTCAAGGTGGCATCTGCCTCTTGGAGCAATTATATGTCCCCTTGCAGAAGCTCCTGAAGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCTACTGGTGTCATTCGTTGTAGGAGGTGTCGTACATATGTGAACCCATATGTGACATTCACTGATGCAGGAAGAAAATTCCGTTGCAATGTTTGCACCTTGCTTAACGATGTTCCTAGTGAATATTATGCACAATTGGATGCCACTGGCCGAAGGGTTGATATGGATCAACGACCTGAGCTTACAAAGGGCACTGTGGAATTTGTTGCCCCTGCGGAATATATGGTGCGGCCGCCAATGCCCCCTGTATATTTCTTCCTCATTGATGTTTCCATATCTGCTGTTAGAAGTGGAATGATCGAGGTAGTGGCCCAAACAATCAAATCATGCTTAGATGAGCTACCTGGCTTTCCTAGAACACAAATAGGCTTTGCAACATTTGACAGCACcatacatttttataatatgaagTCATCTTTGACTCAGCCACAGATGTTGGTTGTCTCAGATCTAGATGACATATTTGTTCCACTGCCAGATGATCTCCTTGTCAACCTATCTGAATCAAGAAGTGTGGTTGAAAGTTTCCTTGATAGTTTGCCAACCATGTTCCAGGGCAATATGAATCTGGAATCTGCTTTTGGTCCAGCTCTTAGGGCTGCATTTATGGTTATGAGCCAACTTGGAGGGaagttgttaatttttcaaaatacactTCCGTCTCTTGGTGTTGGTCGCTTAAAATTACGTGGAGACGATGCTCGTGTTTATGGGACAGATAAAGAACATGCCTTAAGGGTGCCAGAAGATCCATTTTACAAGCAAATGGCTGCTGAGTTTTCTAAATACCAGATATCAGTAAATGTGTATGCATTCAGTGACAAATACACTGACATAGCGTCCTTAGGAACTCTTGCAAAGTATACTGCTGGTCAAGTGTATTATTACCCAGCTTTCCAATCTGCCATTCATGGGGAGAAATTAAGACATGAGTTGAGGAGAGATCTTACCAGGGAAACTGCCTGGGAAGCCGTAATGCGTGTCAGATGTGCAAAAgGTGTCCGCTTCACGACATATCATGGACACTTTATGCTAAGGTCCACTGATTTGTTGGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCTCTTGAAGAGACATTACTGACAACCCAGACAATGTATTTCCAAGTTGCATTGCTGTATACTGCATCTTGTGGAGAAAGGCGTATCAGAATACACACAGCGGCAGCTCCCGTAGTTACAGACTTGGGAGAGATGTATCGCATGGCTGATACTGGTGCCATTGTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACATTATCTCATAAACTGGAAGATGCACGCAATGCTATGCAGCTGAGAATTGTCAAAGCCCTCAAAGAATATAGAAATCTCTATTCTGTCCAGCATCGCTTGGCAAACAGAATGATATACCCAGAATCTCTTAAGTTCCTACCTTTGTATGGATTGGCTCTTTGCAAATCAACACCTGTCCGTGGGGGGTATGCAGATGCTCCACTTGATGAAAGATGTGCAGCAGGATATACGATGATGGCTATACCAATAAAAAGGCTGTTGAAACTTCTCTATCCTAGCTTGATTCGGCTGGATGAATATCTTTTGAAGCCATTTGCACAGGCGGATGACTTCAAAAACATTGAGAGAAGGTTGCCTTTGGCTGGGGAGAGCTTGGATTCTAGAGGcctttatttatatgatgACGGATTCCGGTTCATTTTATGGTTCGGTAGAGTGCTTTCACCTGATATAGCTATGAATCTACTTGGGCCTGACTTTGCTGCAGAATCGTCAAAGGTTACTCTCAAGGAGCAGGATAATGAGATGTCAAGAAAGTTAATGAGGATACTCGAGAAGTTCAGGAAAAGTGATAGTTCCTATTATCAGCTGTGCCACCTCGTGAGACAGGGCGAGCAGCCCAGGGAAGGATTCCTTATTCTTGCAAACCTTGTCGAGGATCAGATGGGTGGTAACAGTGGGTATGCTGATTGGATTATACAAATATCGCGACAATTGCAGCAATA 3092 0.4518 MGTENPGRPSFPARPSATPFAAGQTMSPFSSTGPVAGSEPPSFRPTPAAASQTTSPFSSSGPVIGTGAPSSRPTPPGRFNDPSVPPPPTSNVPSPGGPFQRFPTPHLSSPAQVVPLRSPSMGQPSLQPSPAQTPSFPASLHHQSHTPFVPMGSPPQSATSPPPSLNVPPPMSDSSFPVPRPNIQPSFPGYARKQSGAEVQTPSMQSSFLTNQGNYVPALPAAPSPFMSHQGGYVPPPPVAAPPGMPPMQQPGSGPPIGTIQGLAEDFSSLSIQTRPGTMDAVIDAHELPRPLDGDVEPKCLAEMYTMNCNPRYLRLTTSAIPGSQSLASRWHLPLGAIICPLAEAPEGEEVPIVNFAPTGVIRCRRCRTYVNPYVTFTDAGRKFRCNVCTLLNDVPSEYYAQLDATGRRVDMDQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVESFLDSLPTMFQGNMNLESAFGPALRAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDARVYGTDKEHALRVPEDPFYKQMAAEFSKYQISVNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRVRCAKGVRFTTYHGHFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRIHTAAAPVVTDLGEMYRMADTGAIVSLFSRLAIEKTLSHKLEDARNAMQLRIVKALKEYRNLYSVQHRLANRMIYPESLKFLPLYGLALCKSTPVRGGYADAPLDERCAAGYTMMAIPIKRLLKLLYPSLIRLDEYLLKPFAQADDFKNIERRLPLAGESLDSRGLYLYDDGFRFILWFGRVLSPDIAMNLLGPDFAAESSKVTLKEQDNEMSRKLMRILEKFRKSDSSYYQLCHLVRQGEQPREGFLILANLVEDQMGGNSGYADWIIQISRQLQQ 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03211 1030 Gene3D - 309 761 - -
Bva04g03211 1030 SUPERFAMILY Zn-finger domain of Sec23/24 353 435 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bva04g03211 1030 MobiDBLite consensus disorder prediction 75 100 - -
Bva04g03211 1030 PANTHER OS04G0129500 PROTEIN 27 1030 - -
Bva04g03211 1030 SUPERFAMILY Helical domain of Sec23/24 773 880 IPR036175 GO:0006886|GO:0006888|GO:0030127
Bva04g03211 1030 Pfam Sec23/Sec24 trunk domain 436 672 IPR006896 GO:0006886|GO:0006888|GO:0030127
Bva04g03211 1030 Gene3D Severin 881 1009 IPR029006 -
Bva04g03211 1030 SUPERFAMILY vWA-like 436 675 IPR036465 -
Bva04g03211 1030 MobiDBLite consensus disorder prediction 1 198 - -
Bva04g03211 1030 MobiDBLite consensus disorder prediction 154 184 - -
Bva04g03211 1030 MobiDBLite consensus disorder prediction 105 142 - -
Bva04g03211 1030 MobiDBLite consensus disorder prediction 45 67 - -
Bva04g03211 1030 Pfam Sec23/Sec24 helical domain 773 876 IPR006900 GO:0006886|GO:0006888|GO:0030127
Bva04g03211 1030 SUPERFAMILY beta-sandwich domain of Sec23/24 201 771 - -
Bva04g03211 1030 Gene3D - 307 420 - -
Bva04g03211 1030 Pfam Sec23/Sec24 zinc finger 362 399 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bva04g03211 1030 MobiDBLite consensus disorder prediction 20 37 - -
Bva04g03211 1030 Gene3D von Willebrand factor, type A domain 438 675 IPR036465 -
Bva04g03211 1030 Gene3D Sec23/Sec24 helical domain 762 1027 - -
Bva04g03211 1030 PANTHER SEC24-RELATED PROTEIN 27 1030 - -
Bva04g03211 1030 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 890 1029 IPR036180 -
Bva04g03211 1030 CDD Sec24-like 436 677 IPR041742 GO:0006886|GO:0006888|GO:0030127
Bva04g03211 1030 Pfam Sec23/Sec24 beta-sandwich domain 678 761 IPR012990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03211 Bva-Chr4 26138038 26145310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03211 K14007 - gmx:100791083 1609.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03211 04 26138038 26145310 Bva13g03206 13 22381473 22388468 BWGD