Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03154 ATGGCTAATCCAACCCATCCTAATGTTGGGTCCCTCACTATCACCTCTCCGAGCCTAGACCGACAGAGTCCTCAGCTTGAGAAAAGTCCGATTCCACCTCCTCCTCCAAGTTTTGCCGCAGCACCTAGATTTCCTCCAGAAAAATTACAAGGGCAAGCTTCTTCTCCTTCCATTAAAACCCCAAACGTTTTGTCACCACCCAATGGGGCCAAAACTGGTAGTCCTGTTCCTCATTTAAGCACCCCTCCCGGACCTCCAGTTTTTACTTCTCCTGTTCGTCCGGCTGCAATACCTTTTCGCACATCACCAGCATCGCCACAGCCAGTTGCTTTTTCTTCGGTTTCATCTTTACCTACATCATCGCCTCCCCAATTTTCAAATGGATCTTTTGAGTTGCAGCACCAAGTTTCTGATGGTATAGAGCAAGCAGACCCGGTTGGGGAATCTCCGTTTGTTCTTTTCTCAGCTCATAAGGTATTAAAACAGAAGAAGCAAGCTAATGTACCtagtttggggtttggggcaTTGGTCTCTCCTGGAAGGGAGGTCTCAACAGCTCCTCAAGTAATACAACGTGATCCCCATCACTGCCAAAGCTGTGGAGCTTATGCAAACATCTATTGTAAGATATTGCTTGGATCAGGTCAATGGCAGTGTGTAATATGTCGGAATCTGAATGGAAGTGATAGTGAGTATGTTGCTACCAGCAAGGAAGACCTTCGCAGATTTCCAGAACTATCATCACCGGTGGTTGACTATGTTCAAACTGGGAACAAGAGACCTGGCTATGTTCCAGTGTCAGATTCAAGAATTTCTGCACCAATTGTTCTTGTAATAGATGAATGTTTAGATGAACCTCATTTACATCATTTACAGAGCTCTTTGCATGCTTTTGTTGATTCTCTTCCCCCTACAACGAGAATAGGAATTGTACTATATGGACGTACTGTATCAATTTATGACTTTTCAGAGGATGCAATTGCTTCTGCTGATGCGCTTCCTGGGGACAAATCACCTACTCAAGATTCCTTGAAGGCATTGATTTATGGTACAGGCATATACTTGTCACCGATGCATGCTTCACTTCCTGTAGCACATGCTATATTTTCATCACTTAGACCCTACAAGCTGAACATTCCGGAGGCTTCTAGAGATCGATGTTTAGGTACAGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGGCCATCTGCAGAACTGTCTAGAGCGGGGGTGATCAAAAGGTCGGGAGGCAATAACAGAATTATTGTCTGTGCTGGTGGACCCAACACGTATGGCCCTGGGTCTGTTCCTCATCCTTTTAGTCACCCAAATTATCCTTATTTGGAAAAGACAGCATTGAAGTGGATGGAGAATCTAGGCAATGAGGCTCATCGATACAATACTGTGGTTGACATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTGGAGCCTCTCGCAAAAGCCTCAGGTGGTGTTTTTGTTCTCCATGATGATTTTGGAGAAGCCTTTGGTGTTAATTTGCAAAGAGCTTCTTCTAGAGCAGTAGGGTCTCATGGTTTGTTGGAATTGCGCACGTCAGACGATATTCTTGTAACTCAAGTTGTGGGTCCTGGGGAAGAGGCACATATAGACACTCATGACACCTTTAATAATGACACTGCTCTTTATATTCAAATGTTGAGTGTTGAAGAAACACAGAGCTTCTCTTTCTCCATGGAAACTAAAGGTGATATCAAAAgtgattttgtatttttccagTTTGTAATTCAGTATTCAAACGTATATCAAGCTGATATATCGAGGGTGATTACTGTTAGACTACACACTGTGGATAGTATTTCGGGATATCTTCAGAGTGTTCAAGATGAAGTTTTAGCTGTCCTCATTGCAAAAAGAACGTTGTTACGGGCCAAAAACTATTCTGATGCAATTGACATGCGAGCAACAATAGATGAAAGGGTCAAGGATATTGCTCTAAATTTTGGCTCCCAGTTACCCAAGACAAAACTTTACAAATTCCCAAAGGAGCTCTCTCTTTTGCCAGAGCTTCTTTTCCATCTCAGAAGAGGACCACTATTAGGAAGCATTATTGGTCATGAAGATGAGAGGTCGGTGCTACGGAACCTGTTTTTGAATGCATCCTTTGATCTTTCTATCCGAATGGTAGCTCCTCGTTGCCTAATGCACAGGGAGGGGGGAACTTTTGAAGAGCTACCAGCTTATGATCTTGCTATGCAGTCTGATGCTGCTGTGGTTCTTGACCATGGGACTGACGTCTTCATTTGGCTGGGTGCCGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCCTTGGCCGCTTGTCGGACATTAGCCGAAGAGCTAACTGAATTGCGTTTTCCAGCTGCGCGTATCCTTGCATTTAAGGAAGGTAGCTCCCAGGCGAGATACTTTGTTTCTCGTCTCATACCAGCACATAAGGATCCTCCTTATGAGCAGGAGGCAAGATTTCCGCAACTTAAATCATTGTCAACGGAGCAGCGGACAAAGTTAAAAAGCAGTTTTCTTCAGTTTGATGATCCTAGTTTCTGTGAGTGGATGCGGAGTTTGAAAGTGGCACCACCAGAACCAAGCTG 2624 0.436 MANPTHPNVGSLTITSPSLDRQSPQLEKSPIPPPPPSFAAAPRFPPEKLQGQASSPSIKTPNVLSPPNGAKTGSPVPHLSTPPGPPVFTSPVRPAAIPFRTSPASPQPVAFSSVSSLPTSSPPQFSNGSFELQHQVSDGIEQADPVGESPFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTAPQVIQRDPHHCQSCGAYANIYCKILLGSGQWQCVICRNLNGSDSEYVATSKEDLRRFPELSSPVVDYVQTGNKRPGYVPVSDSRISAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRIGIVLYGRTVSIYDFSEDAIASADALPGDKSPTQDSLKALIYGTGIYLSPMHASLPVAHAIFSSLRPYKLNIPEASRDRCLGTAVEVALAIIQGPSAELSRAGVIKRSGGNNRIIVCAGGPNTYGPGSVPHPFSHPNYPYLEKTALKWMENLGNEAHRYNTVVDILCAGTCPVRVPILEPLAKASGGVFVLHDDFGEAFGVNLQRASSRAVGSHGLLELRTSDDILVTQVVGPGEEAHIDTHDTFNNDTALYIQMLSVEETQSFSFSMETKGDIKSDFVFFQFVIQYSNVYQADISRVITVRLHTVDSISGYLQSVQDEVLAVLIAKRTLLRAKNYSDAIDMRATIDERVKDIALNFGSQLPKTKLYKFPKELSLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSIRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTELRFPAARILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLKSLSTEQRTKLKSSFLQFDDPSFCEWMRSLKVAPPEPS 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03154 874 CDD gelsolin_like 727 818 - -
Bva04g03154 874 MobiDBLite consensus disorder prediction 1 126 - -
Bva04g03154 874 Gene3D - 182 247 - -
Bva04g03154 874 MobiDBLite consensus disorder prediction 1 25 - -
Bva04g03154 874 Gene3D von Willebrand factor, type A domain 274 519 IPR036465 -
Bva04g03154 874 Pfam Sec23/Sec24 helical domain 626 722 IPR006900 GO:0006886|GO:0006888|GO:0030127
Bva04g03154 874 SUPERFAMILY Helical domain of Sec23/24 625 725 IPR036175 GO:0006886|GO:0006888|GO:0030127
Bva04g03154 874 SUPERFAMILY vWA-like 275 512 IPR036465 -
Bva04g03154 874 Pfam Sec23/Sec24 zinc finger 194 232 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bva04g03154 874 Pfam Sec23/Sec24 trunk domain 276 503 IPR006896 GO:0006886|GO:0006888|GO:0030127
Bva04g03154 874 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 61 874 - -
Bva04g03154 874 SUPERFAMILY beta-sandwich domain of Sec23/24 20 623 - -
Bva04g03154 874 Pfam Sec23/Sec24 beta-sandwich domain 521 612 IPR012990 -
Bva04g03154 874 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 727 867 IPR036180 -
Bva04g03154 874 MobiDBLite consensus disorder prediction 27 42 - -
Bva04g03154 874 SUPERFAMILY Zn-finger domain of Sec23/24 184 258 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bva04g03154 874 CDD trunk_domain 268 512 - -
Bva04g03154 874 Gene3D Sec23/Sec24 helical domain 614 733 - -
Bva04g03154 874 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 61 874 IPR037364 -
Bva04g03154 874 MobiDBLite consensus disorder prediction 105 126 - -
Bva04g03154 874 MobiDBLite consensus disorder prediction 50 69 - -
Bva04g03154 874 MobiDBLite consensus disorder prediction 78 92 - -
Bva04g03154 874 Gene3D Severin 741 841 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03154 Bva-Chr4 25828584 25833379 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03154 - - gmx:100781518 1485.7