Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03152 ATGGGGGCCGAGAATGACCTGGATGGCCATACGAAAAAACATGACGAGGCAAGCACATCAGAAAATCATGCAGAAGCCAGTGGAAACgacaaacaaacagaaaaagcTGAGACAGTTCCATTTTACAAGCTCTTCACATTTGCGGACTCTATTGATTTTCTGCTCATGTTTGTGGGGACAGTTGGAGCCATCGGAAATGGCTTGGGCTTGCCTCTTATGACATTACTTTTCGGTCAAATGATTGATTCCTTTGGTACCAACCAGAGAAACAGTCACGTCGTTCATGAAGTCTCCAAGgTTTGTCTGAAATTCGTATACTTGGGAGTTGGAAGTGGAGTGGCAGCATTTCTCCagGTGACTGGGTGGATGGTCACAGGGGAGAGACAGGCTGCAAGAATAAGGGGTTTGTATTTGAAAACAATATTGAGACAGGATGTTGCTTTCTTtgataaagaaacaaatactGGAGAGGTGGTAGGGAGAATGTCTGGTGACACTGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAATTCCTACAATTAATATCAACGTTCTTTGGGGGATTTATCGTAGCATTTGTTAAAGGGTGGCATCTTACCCTTGTCTTGTTGTCCACTGTTCCTCTTCTTGCAATAGCTGGTGCAGCTATAGCCATTATCATAGGCAGGATGGCTTCCCGTGGTCAAACTGCTTATGCAAAAGCGGCAAATATAGTTGAACAGACTATTGGTTCAATTAGAACGGTTGCATCCTTCACTGGGGAAAAACAAGCAGTATCTGGTTACAGGAAATATCTTGTACATGCTTACAAATCTGGAGTTCATGAAGGTTTTGTAGCCGGAATGGGTCTTGGCATGGTTATGTTTGTTCTCTTTGCTGGATATGCTTTGGCTGTGTGGTATGGCGCAAAGTTGATTCTGGAGAAAGGATATACTGGGGGTGTAGTGATTAATGTGATCATTGCTGTATTAACTGCTTCCATGTCCCTTGGCCAGGCATCACCATGCATAAGTGCTTTTGCTGCTGGTCAAGCTGCAGCGTATAAAATGTTTAAGACAATTGAGAGGAGACCGGAGATAGATGCTTATGATCCAAATGGAAAAGTATTAGAGGATATTCAAGGTGACATAGAGTTAAGGGATGTATACTTCAGTTATCCAGCTAGACACGAGGAGTTGATATTCGATGGGTTCTCTCTTCATATACCTAGTGGCACAACTGCAGCTTTAGTTGGACAGAGTGGGAGTGGAAAGTCAACAGTTATTAGTCTGATCGAAAGATTCTACGATCCACAAGCAGGTGAAGTTCTTATAGATGGGATTAACCTCAAACAACTTCAGCTCAGATGGATCAGAGGAAAAATTGGCCTTGTCAGCCAAGAGCCTGTGTTGTTTGCAGCTAGCATTAAGGATAACATAGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAAAGCTGCAGCTGAACTTGCAAATGCAGCTAAATTCATTGACAAATTGCCACAGGGGTTGGACACAATGGCCGGTGAGCATGGAACTCAACTGTCTGGTGGACAAAAGCAACGAATTGCCATTGCAAGAGCAATTCTGAAAGATCCTAGAATTTTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGGATAGTTCAAGAGGCTCTGGACAGGATCATGGTCAACCGAACTACCGTTATTGTAGCACATCGCTTGAGCACAGTGAGAAATGCTGATATGATTGCTGTAATTCACAGAGGAAAGATGGTTGAAAAAGGGACACATTCAGGATTGCTCAAGGATCCTGAAGGAGCTTACTCTCAACTTATACGCttacaagaagaaaacaaggcaTCGGAAGAAACAACAGATCAGCAAAACAAAATAAAATTCATGAAGGGATTTAGTGCAGATGCCAAGATGATGTACGAGGAAGCAAGCCAGGTTGCTAATGATGCTGTTGGAAGTATAAGAACTGTAGCTTCTTTTTGTGCTGAAGAGAAGGTAATGGAACTATACAGGAAAAAATGTGAAGGCCCTATGAAAACAGGAATACGACAAGGCTTGATAAGTGGAATGGGATTTGGATTGTCGTTTTTCTTGCTATTTTCTGTGTATGCACTTAGTTTCTATGCTGGAGCCAGATTTGTGGCAGAAGGGAAAACAACATTCACAAAAGTCTTCCGGgttttctttgctttgacAATGGCAGCTATGGCAATTTCCCAATCAAGTTCCTTTGCTCCTGATTCTAGTAAAGCGAAGACAGCTGCTGCTTccatatttcaaataatagaTAGAAAGTCTCTATTAGATCCAAGTGATGAGTCTGGTACCACACTAGATAATGTAAAGGGAGAAATTGAGCTTCGTCATGTAAGCTTTAAGTATCCATCTAGGCCAGATATACAAATTTTCCGAGACCTCAGTTTGACCATTCATTCTGGCAAGACAGTGGCCCTTGTTGGCGAAAGTGGAAGTGGGAAATCCACTGTGATTGCATTGTTACAAAGATTTTATGATCCTGATTCAGGTCAAATTACACTTGATGGAATAGAAATTCAGAAGTTCCAACTAAAATGGTTAAGGCAACAAATGGGTCTTGTAAGCCAAGAACCAGTATTATTCAATGACACTATCCGCGCCAATATTGCATATGGGAAAGAAGGAGGTGCAAAAGAAGCAGAAATCATAGCTGCAGCAGAGTTGGCTAATGCACATGGTTTCATTAGTGGCTCACAACAGGGTTATGACACAATAGTGGGAGAGAGGGGAATCCAATTATCTGGAGGGCAGAAACAAAGGGTAGCCATAGCACGTGCTATAATGAAAAGTCCAAAGATATTGCTCCTAGATGAGGCCACGAGTGCATTAGACGCTGAGTCAGAAAGAGTAGTTCAAGATGCACTGGATAGGGTAATGATGAACAGGACCACTGTGGTAGTGGCACATCGCCTATCCACCATTAAGAATGCAGATGTAATTGCCGTGGTTAAAAATGGAGTTATAGTAGAGAAAGGAAGACATGAGACCTTGATCAACATAACAGATGGATTTTATGCTTCTTTGGTCCAACTCCACACCAGTGCTTCAACAGTATG 3113 0.4125 MGAENDLDGHTKKHDEASTSENHAEASGNDKQTEKAETVPFYKLFTFADSIDFLLMFVGTVGAIGNGLGLPLMTLLFGQMIDSFGTNQRNSHVVHEVSKVCLKFVYLGVGSGVAAFLQVTGWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLISTFFGGFIVAFVKGWHLTLVLLSTVPLLAIAGAAIAIIIGRMASRGQTAYAKAANIVEQTIGSIRTVASFTGEKQAVSGYRKYLVHAYKSGVHEGFVAGMGLGMVMFVLFAGYALAVWYGAKLILEKGYTGGVVINVIIAVLTASMSLGQASPCISAFAAGQAAAYKMFKTIERRPEIDAYDPNGKVLEDIQGDIELRDVYFSYPARHEELIFDGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKQLQLRWIRGKIGLVSQEPVLFAASIKDNIAYGKEGATIEEIKAAAELANAAKFIDKLPQGLDTMAGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHSGLLKDPEGAYSQLIRLQEENKASEETTDQQNKIKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKTGIRQGLISGMGFGLSFFLLFSVYALSFYAGARFVAEGKTTFTKVFRVFFALTMAAMAISQSSSFAPDSSKAKTAAASIFQIIDRKSLLDPSDESGTTLDNVKGEIELRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQKFQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGGAKEAEIIAAAELANAHGFISGSQQGYDTIVGERGIQLSGGQKQRVAIARAIMKSPKILLLDEATSALDAESERVVQDALDRVMMNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINITDGFYASLVQLHTSASTV 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03152 1037 Gene3D ABC transporter type 1, transmembrane domain 43 626 IPR036640 GO:0005524|GO:0016021
Bva04g03152 1037 SUPERFAMILY ABC transporter transmembrane region 634 776 IPR036640 GO:0005524|GO:0016021
Bva04g03152 1037 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 634 757 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g03152 1037 CDD ABC_MTABC3_MDL1_MDL2 792 1030 - -
Bva04g03152 1037 MobiDBLite consensus disorder prediction 1 33 - -
Bva04g03152 1037 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524
Bva04g03152 1037 ProSitePatterns ABC transporters family signature. 932 946 IPR017871 GO:0005524
Bva04g03152 1037 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 615 IPR003439 GO:0005524
Bva04g03152 1037 Pfam ABC transporter 398 546 IPR003439 GO:0005524
Bva04g03152 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 617 IPR027417 -
Bva04g03152 1037 Pfam ABC transporter transmembrane region 634 743 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g03152 1037 Pfam ABC transporter transmembrane region 56 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g03152 1037 Gene3D - 369 618 IPR027417 -
Bva04g03152 1037 Gene3D - 782 1032 IPR027417 -
Bva04g03152 1037 CDD ABC_MTABC3_MDL1_MDL2 379 617 - -
Bva04g03152 1037 MobiDBLite consensus disorder prediction 1 32 - -
Bva04g03152 1037 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 792 1029 IPR003439 GO:0005524
Bva04g03152 1037 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 344 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g03152 1037 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 632 1033 - -
Bva04g03152 1037 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 6 621 - -
Bva04g03152 1037 PANTHER - 632 1033 - -
Bva04g03152 1037 PANTHER - 6 621 - -
Bva04g03152 1037 CDD ABC_6TM_Pgp_ABCB1_D2_like 633 773 - -
Bva04g03152 1037 SUPERFAMILY ABC transporter transmembrane region 43 363 IPR036640 GO:0005524|GO:0016021
Bva04g03152 1037 Gene3D ABC transporter type 1, transmembrane domain 635 1034 IPR036640 GO:0005524|GO:0016021
Bva04g03152 1037 Pfam ABC transporter 811 960 IPR003439 GO:0005524
Bva04g03152 1037 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 340 - -
Bva04g03152 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1030 IPR027417 -
Bva04g03152 1037 SMART AAA_5 406 598 IPR003593 -
Bva04g03152 1037 SMART AAA_5 819 1012 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03152 Bva-Chr4 25814381 25820556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03152 31 626 Calmodulin-binding Proteins AT2G36910 48.500 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03152 K05658 - cpap:110814148 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03152 04 25814381 25820556 Bva13g03134 13 22003026 22008798 BWGD