Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03130 ATGAAATACTCTCACATTTCACCACTAGCATTctctatattttttgttagtttatttCTTTGCATCCAAGCAAGGCATCACCATATTACAAAGCACAAACACACACGTTCTCATATTTCATCTGGAATTTCTGTGCCTCCTTCTTTTCCACCCGAGCCTGCTGACCCTCCTAGCGAGCCTGCTGACCCTCCTGCAGTTGCTCCTAGCCCTTCTCCGGATAATTACGATAATGCCAATGGTGTTTTTGATGTAAGAACATTTGGGGCCATTGGTGATGGTTTAACAGATGATACAGAGGCATTCAAAATGGCTTGGGACACTGCCTGCCAAAGTGAATCGCCAGTTAATGTTATCCGTGTTCCTCGTGGTTTCTCCTTCGTCATTCAATCTACCATCTTCACAGGTCCTTGTCAAGGTGCTTTGGTATTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCAGAATCTTGGCCTAAGAATACCAGTAGGCACCAGTGGCTTGTCTTTTACAGAATCAATGGGATGTCCCTTGAAGGAGGAGGTTTAATAGAtggaagaggagaaaaatggTGGGACCTTCCCTGTAAACCTCATAAGGCTATAAGGTTTTTTATGAGTTCTAACTTGACTGTGCAAGGACTTAGCATCAAGAATAGCCCCCAGTTCCATTTCAGATTTGATGCTTGCAAAAGCGTCCATGTAGAATCAATCTCCATAACAGCACCAGCACTAAGTCCAAATACTGATGGAATTCACatagaaaatacaaatgatgTCAAAATATACAATTCTGTAATTTCTAATGGGGATGACTGTATATCAATTGGTTCTGGTTGCCATGAAGTAGATATAAAAAACATGACATGTGGACCTGGTCATGGGATTAGCATTGGTAGCCTGGGCAACCACAATTCCAGAGCCTGTGTTTCAAACATCACAGTGAGAGACTCAGTGATAAAAATGTCAGATAATGGTGTTAGGATTAAGACATGGCAAGGAGGATCTGGAGCAGTATCAGGAGTGACATTTAGTAACATTCACATGGACAGTGTAAGGAATCCCATCATAATTGACCAATTCTACTGCCTCACTAAGGACTGCAGCAACAAAACCTCAGCAGTTTTGGTATCAGATATAGTCTACACAAACATAAAGGGAACCTATGATGTAAGGAGCCCACCAATGCGTTTTGCCTGCAGTGACTCCTTCCCATGCACCAACTTAACGCTTTCTGATATTGAGCTTCTTCCAGCTAAAGGAGATATAGTGCGAGATCCCTTCTGTTGGAAAGCTTATGGAGATTTGCAGAAACTAACCATTCCACCAGTCTCTTGCCTGCTTGAGGGCACTCCCCAGTCTACGTCAGACAACAACATATACCATTGCTG 1391 0.4148 MKYSHISPLAFSIFFVSLFLCIQARHHHITKHKHTRSHISSGISVPPSFPPEPADPPSEPADPPAVAPSPSPDNYDNANGVFDVRTFGAIGDGLTDDTEAFKMAWDTACQSESPVNVIRVPRGFSFVIQSTIFTGPCQGALVLKVDGTLMPPDGPESWPKNTSRHQWLVFYRINGMSLEGGGLIDGRGEKWWDLPCKPHKAIRFFMSSNLTVQGLSIKNSPQFHFRFDACKSVHVESISITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCISIGSGCHEVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKMSDNGVRIKTWQGGSGAVSGVTFSNIHMDSVRNPIIIDQFYCLTKDCSNKTSAVLVSDIVYTNIKGTYDVRSPPMRFACSDSFPCTNLTLSDIELLPAKGDIVRDPFCWKAYGDLQKLTIPPVSCLLEGTPQSTSDNNIYHC 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03130 463 ProSitePatterns Polygalacturonase active site. 287 300 IPR000743 GO:0004650|GO:0005975
Bva04g03130 463 SMART pbh1 310 331 IPR006626 -
Bva04g03130 463 SMART pbh1 339 360 IPR006626 -
Bva04g03130 463 SMART pbh1 230 256 IPR006626 -
Bva04g03130 463 SMART pbh1 257 278 IPR006626 -
Bva04g03130 463 MobiDBLite consensus disorder prediction 33 74 - -
Bva04g03130 463 MobiDBLite consensus disorder prediction 46 70 - -
Bva04g03130 463 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 453 - -
Bva04g03130 463 Pfam Glycosyl hydrolases family 28 109 416 IPR000743 GO:0004650|GO:0005975
Bva04g03130 463 Gene3D - 71 459 IPR012334 -
Bva04g03130 463 PANTHER - 6 453 - -
Bva04g03130 463 SUPERFAMILY Pectin lyase-like 78 456 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03130 Bva-Chr4 25736584 25738461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03130 76 463 Glycoside Hydrolase AT1G02460 69.951 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03130 - - gmx:100778836 750.74