Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03120 ATGGGTActgagagaaagaggaaggtGAGCTTTTTCGATGTGGTAGACGAGACTGCGGCTAAGGTGGTTAAAGTTAATGGTGGAGTTGTCAACACCAACAACAGCTTTGGTAACAGTCTCATTAATAGGTGGAATGGGAGACCTTACTCGCAGAGATACTATGAGATATTGGACAAGAGGAAGACCTTACCGGTTTGGCACCAGAAGGAGGAATTCTTGCAGGCTTTGAAGGCTAACCAGACTTTGATTTTGGTTGGTGAGACTGGGAGTGGTAAAACTACACAGATTCCTCAGTTTGTTTTAGAAGCTGTCGATATGGAAACCCCTGACAAACGCAGGAAGATGATGATTGGTTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCCAGACGTGTCGCCGAAGAGATGGACGTAAATATTGGAGAGGAGGTTGGTTACAGTATCAGATTTGAGGATTGCAGTAGTGCAAGAACAGTTTTAAAGTATCTCACAGATGGTATGCTTTTAAGAGAAGCAATGACAGATCCACTTTTGGAACGGTACAAAGTGATTATTCTTGACGAGGCACATGAAAGGACTTTGGCTACAGATGTGCTATTTGGCCTACTGAAGGAAGTACTTAAAAATAGACCTGACTTGAAGTTGGTTGTTATGAGTGCAACACTTGAGGCGGAGAAGTTCCAGTTCTATTTTAATGGTGCCCCCCTTATGAAAGTTCCTGGAAGGCTTCATCCAGTGGAAATTTTCTATACTCAGGAGCCTGAAAGGGATTACTTGGAGGCTGCTATTAGGACAGTGGTGCAGATACACACGTGTGAGCCTCCAGGAGATATACTTGTTTTTCTTACAGGAGAGGAAGAGATAGAAGATGCATGCcgcaaaatatcaaaagaaattggaaatttggGAGACCAGGTGGGCCCTGTGAAAGTGGTACCTCTATATTCTACGCTTCCTCCAGCTATGCAGCAGAAAATATTTGAGCCAGCACCATCTCCTTTGAAGGAAGATGGGCCTTCTGGAAGGAAAATTGTGGTATCAACAAACATAGCAGAAACCTCGTTGACAATTGACGGAATAGTCTATGTTATTGATCCTGGGTTTTCTAAGCAAAAGGTCTATAACCCACGAGTACGTGTTGAGTCTCTGTTGGTATCTCCAATATCAAAGGCTAGTGCACACCAGAGGTCTGGGCGTGCCGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTATACTGAGAGAAGTTTTAACAATGATCTTCAACCACAGACCTATCCTGAAATTTTGAGATCGAATCTCGCCAATACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATCTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCTGAGACCTTGATGCGTGCTTTGGAAGTGTTAAACTACTTGGGTGCACTCGATGATGATGGTAACTTATCAAAGCTGGGTGAAATTATGAGTGAATTTCCTTTGGACCCTCAGATGTCCAAGATGCTCGTTGTCAGTCCCGAATTCAACTGTTCAAATGAGATTCTGTCAATCTCAGCAATGCTCTCAGtaCCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCGGCGGATGAAGCGAAAGCTAGGTTTGGGCACATTGACGGGGATCATCTCACGCTCTTGAATGTGTACCATGCTTACAAGCAAAATAATGAGGATACTTCTTGGTGCTATGATAACTTTATTAATCATAGGGCATTGAAAGCTGCTGATAATGTTAGACAACAGCTTGTGCGAATCATGGCCCGGTTTAACCTGAAGATGTGTAGCGCTGATTTTAACAGCCGCGATTACTATGTCAACATTAGAAAGGCTATGCTAGCTGGGTACTTCATGCAGGTGGCTCACTTGGAGCGCACTGGGCACTACTTGACAGTGAAAGACAACCAGGTGGTGCACTTGCATCCATCTAACTGTCTCGACCACAAGCCTGAATGGGTCATCTACAATGAATATGTGCTCACCAGTCGGAATTTTATTCGTACGGTGACAGATATACGTGGGGAATGGTTAGTTGATATAGCATCGCACTATTACGAGTTATCAAATTTTCCACAATGTGAGGCCAAGCGCGTCCTTGAGAGGCTTTATAAAAAGCGGGAGAGGGAAAAGGAGGAAGCCAAAAATCGTAAGTG 2183 0.4324 MGTERKRKVSFFDVVDETAAKVVKVNGGVVNTNNSFGNSLINRWNGRPYSQRYYEILDKRKTLPVWHQKEEFLQALKANQTLILVGETGSGKTTQIPQFVLEAVDMETPDKRRKMMIGCTQPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQFYFNGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKISKEIGNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPSPLKEDGPSGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLSKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDTSWCYDNFINHRALKAADNVRQQLVRIMARFNLKMCSADFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIASHYYELSNFPQCEAKRVLERLYKKREREKEEAKNRK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03120 727 Pfam AAA domain 80 220 IPR003593 -
Bva04g03120 727 SMART ultradead3 60 251 IPR014001 -
Bva04g03120 727 Pfam Helicase associated domain (HA2) 468 556 IPR007502 GO:0004386
Bva04g03120 727 Gene3D - 15 244 IPR027417 -
Bva04g03120 727 Pfam Helicase conserved C-terminal domain 271 405 IPR001650 -
Bva04g03120 727 SMART helicmild6 288 406 IPR001650 -
Bva04g03120 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 267 447 IPR001650 -
Bva04g03120 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 242 IPR014001 -
Bva04g03120 727 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 727 - -
Bva04g03120 727 Gene3D - 452 608 - -
Bva04g03120 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 614 IPR027417 -
Bva04g03120 727 PANTHER ATP-DEPENDENT RNA HELICASE 1 727 - -
Bva04g03120 727 SMART ha2_5 467 557 IPR007502 GO:0004386
Bva04g03120 727 CDD DEXHc_DHX15 51 241 IPR044756 GO:0003724|GO:0005524
Bva04g03120 727 CDD SF2_C_RHA 246 414 - -
Bva04g03120 727 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 618 694 IPR011709 -
Bva04g03120 727 Coils Coil 706 726 - -
Bva04g03120 727 Gene3D - 245 427 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03120 Bva-Chr4 25688573 25692679 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03120 K12820 - tcc:18613736 1316.98