Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03087 ATGGCTCCCTCCCGTCGGCAGACCATTGGCCGATCGCCACTCGTCAATCCACAGCGCCAGattacttctttcttctctaaaTCCACTTCTCCATCTCCTTCCCCCATTTTTGCCAAGCAAAAATCGTCTAACCCTAATTCTAAAAATGCAGAGCCTTGTAGCCCTAGCCCCAGTCCTACAACACCATCTCCTCACAATCCTAAACCCAAGAAACCCCTCCTTCTCATCGGCGCTTCATCACCATCCATTCCTTCTCCTCCATCTTCAGTATCTGTTGATAAGCAGTCCTACGGAGAAGACCAGGTTGGGAGAAGGGTCAAGGTTTACTGGCCATTGGATAAAGCCTGGTACGAAGGTTGTGTCAAATCTTTTGATAAGGCTACTGGTAAGCATTTAGTTAAATACGATGATGACGAAGAGGAATCATTGGACCTCGCCAAGGAGAAGATTGAATGGGTTCAAGAAACGTTCAGCAAGTTGAAACGGCTTCGTCGCGGCTTTTCTCCTCCCAAGCAGGTGGTCTTTGACGACGATGAGGGGGCAGAGACTGTGATGGAAGAGAGTCCTGGTGCTGACGTTGCTGATGATGACTCTACTGATGAAGACTGGGGGAAGAATCATGTGGTTGAGGATGCTGATGACAGTGAGGACGATATGGAACTAGAGGAGGAGGAAGACCAAGAGGATGAAGCGGAGAGGTCCAAAGGAAAGCCAAGTCTAAAGGTTGAGTCTAAAAAGCGGAAGCTAGATGGAGGACGGAAATCGAGGTCTACAAAGAAGAGCAAGAGCGGAGTTGAAATTGATAAGGGAAGCTTAAAGGTCTCCATGTTAGAGAGTACTAGTAAATTGGAGATTAAAAAGGCACCCAATGGCATTGACAATGTGTCTACGGGTGACGCCTCTGAGAGATTTGCAGTCCGAGAAACTCAGAAATTCCGCTTCCTTAGAGAGGATAGGAGGGATGCTAAAAGGAGACATCCCGGAGATGAAAATTATGACTCAAGAACTCTATACTTGCCTCCCGATTTCTTAAAGAGTCTGTCAGGTGGACAGAGACAATGGTGGGAGTTCAAGTCCAAGCACATGGACAAAGTTCTATTTTTCAAGATGGGTAAATTTTATGAACTGTTTGAAATGGATGCACATATCGGAGTGAAAGAGCTTGATTTGCAGTATATGAAGGGAGAACAACCTCATTGTGGATTTCCAGAGAGAAATTTCTCAATGAATATTGAGAAGTTGGCAAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGTAAAGAAAAGGGTTCTAAAGATAAGGTTGTGAGACGTGAAATATGTGCAGTGGTTACAAAAGGCACATTAACTGATGGGGAGTTGATGTCAGCAAACCCAGACTTTTCATATCTAATGGCAGTGACTGAACACCAAAACCAGTCAATCGAAAGCTGGGAGTGTATATATGGTGTTTGTCTAGTAGATGTTGCCACCAGCAGAATCATACTTGGACAGTTTAAGGATGATTCAGAGCGCAGTGCGCTGTGCAGTCTCTTATCTGAGCTTAGACCAGTTGAAATTGTGAAACCTGCTAAAATACTTAGTGCTGAAACGGAGAGGGTACTACTGAAGCATACAAGAAATCCTCTAGTCAATGAATTAGTTCCAGCTGTAGAATTCTGGGATGCTGAGAAAACTATTCATGAAGTGAAGAGAATTTACAGTCATAGTGTTGATTCTGTTATTGAAAATGATGGCTTGGGCTCCCTACCAGATGTTTTGCTGGAGCTAGTTAAAGCAGGTGAAAGTGGTAGAAGTGCACTTTCAGCACTTGGTGGTGCTCTTTATTATCTGAAACAGGCTTTCCTGGAAGAGACATTACTTAGGTTTGCTCATTTTGAGTTACTTCCATCTTCTGGTGTCAATGATATCGCTTCAAAGCCATACATGGTTCTTGATGCAGCAGCCTTGGAGAATCTTGAGATCTTCGAGAATAGCAGAAATGGAGATTCTTCAGGCACGCTTTATGCACAATTGGACCAATGTGTCACTGCATTTGGAAAGAGATTGCTAAAGATATGGCTTGCAAGACCATTATGTCATTTAGAGTCAATCAAGGAACGCCAAGAAGCTGTGGCAGGTTTAAGGGGAGTTAATCTACCTTATGCACTAGAATTTCGAAAGGCTTTATCAAAGCTACCAGACATGGAGCGGTTGCTTGCACGGATCTTCTCTAGTAGTGAAGGTAGTGGAAGGAATGCTAGTAAAGTGGTTTTGTACGAGGATGCTGCAAAGAAACAACTCCAAGAGTTTATTTCGGCATTGCGTGGTTGTGAACTAATGGTAAAAGCATGTTCTGAACTTGGTGTCGTCTTGAGTGTTGTTGAATCTAGACAACTTCATCATCTGTTAACACCAGGTGAAGGTCTTCCTGATGTCTGCTTGGCTCTAAACCATTTCAAGGATGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGGAGTTGATATGGAGTATGACTCATCCTGTAAAGCAGTTAAGGAGATTGAATCTAGTTTGTCAAAGCATCTCAAGGAACAGAAGAAATTACTTGGAGATTCATCCATCACCTATGTCACAGTTGGAAAGGATTCATATTTGTTGGAAGTGCCAGAAAGTTTGCGTGGGAATATTCCTCGGGACTATGAGCTGCGTTCATCCAGAAAAGGTTTCTTCAGATACTGGACCCCAGATATTAAAAAGTTCTTGAGAGAGCTCTCCCAAGCTGAATCTGAGAAGGAGTCCGCATTGAAAAGCATATTGCAGAGATTAATTGGGCGTTTTTGTGAACATCACACCCAATGGAGGCAATTGGTGTCTACAATTGCTGAGCTGGATGTTTTGATCAGTTTAGCTATTGTTAATGACTACTACGAAGGACCAACATGCCAACCGAGTTTCTTAGGCTCATCAAGTGCAAAAGAAACTCCATGTTTCTCAGCTAAAAGTCTGGGACACCCAGTCCTTAGAAGCGATTCTTTGGGCAAGGGTAGCTTTGTCCCCAATGACGTGACCATTGGTGGTCCACATCAGGCCAGTTTCTTACTTCTCACTGGTCCTAATATGGGAGGAAAGTCAACTCTTCTTCGCCAAGTTTGTTTGGCTGTGATTTTGGCTCAGGTTGGTGCAGATGTCCCTGCAGAGAGTTTTAATTTGTCACTCGTAGACCGGATTTTTGTTCGAATGGGTGCCAGAGATAATATTATAGCTGGCCAAAGTACATTTTTAACCGAGCTTTCAGAAACTGCCACTATGCTGTCATCAGCCACCCGTAATTCATTGGTGGCTCTAGATGAGCTTGGACGTGGAACCTCAACTTCGGATGGGCAAGCCATTGCGGAATCAGTACTAGAACATTTTGTACGGAAAGTGCAGTGCCGTGGAATGTTTTCTACTCATTATCACCGTTTATCAATAGATTATCACAATGATCCCAAGGTCTCTCTCTGCCATATGGCATGCCAAGTAGGCAATGGAATTGGAGGTGTGGACGAAGTCACATTTCTTTACCGGTTGACTCCCGGTGCTTGCCCTAAGAGCTATGGCGTTAATGTTGCTCGGTTAGCTGGACTTCCCACTTCTGTGCTTCAAAAGGCCGCTGCTAAATCGCGAGAATTTGAGGCCTCGTATGGTAAGTGCAGAAGGATATATTCCGATAACACCTCTTGCAGTCAAAGTTGGGTTGATGAGATGAGATTCATCATAAACAAATTAGTGAACACTGCTACAAATTCGAGTTACCAGGACAAACTTTGCGATAGTTCCCTCCCGAGTGAACTTCAGGATAAAGCACGAGTGCTCTTGCAGTA 3878 0.4379 MAPSRRQTIGRSPLVNPQRQITSFFSKSTSPSPSPIFAKQKSSNPNSKNAEPCSPSPSPTTPSPHNPKPKKPLLLIGASSPSIPSPPSSVSVDKQSYGEDQVGRRVKVYWPLDKAWYEGCVKSFDKATGKHLVKYDDDEEESLDLAKEKIEWVQETFSKLKRLRRGFSPPKQVVFDDDEGAETVMEESPGADVADDDSTDEDWGKNHVVEDADDSEDDMELEEEEDQEDEAERSKGKPSLKVESKKRKLDGGRKSRSTKKSKSGVEIDKGSLKVSMLESTSKLEIKKAPNGIDNVSTGDASERFAVRETQKFRFLREDRRDAKRRHPGDENYDSRTLYLPPDFLKSLSGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGVKELDLQYMKGEQPHCGFPERNFSMNIEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELMSANPDFSYLMAVTEHQNQSIESWECIYGVCLVDVATSRIILGQFKDDSERSALCSLLSELRPVEIVKPAKILSAETERVLLKHTRNPLVNELVPAVEFWDAEKTIHEVKRIYSHSVDSVIENDGLGSLPDVLLELVKAGESGRSALSALGGALYYLKQAFLEETLLRFAHFELLPSSGVNDIASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLDQCVTAFGKRLLKIWLARPLCHLESIKERQEAVAGLRGVNLPYALEFRKALSKLPDMERLLARIFSSSEGSGRNASKVVLYEDAAKKQLQEFISALRGCELMVKACSELGVVLSVVESRQLHHLLTPGEGLPDVCLALNHFKDAFDWVEANNSGRIIPHEGVDMEYDSSCKAVKEIESSLSKHLKEQKKLLGDSSITYVTVGKDSYLLEVPESLRGNIPRDYELRSSRKGFFRYWTPDIKKFLRELSQAESEKESALKSILQRLIGRFCEHHTQWRQLVSTIAELDVLISLAIVNDYYEGPTCQPSFLGSSSAKETPCFSAKSLGHPVLRSDSLGKGSFVPNDVTIGGPHQASFLLLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFNLSLVDRIFVRMGARDNIIAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVRKVQCRGMFSTHYHRLSIDYHNDPKVSLCHMACQVGNGIGGVDEVTFLYRLTPGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEASYGKCRRIYSDNTSCSQSWVDEMRFIINKLVNTATNSSYQDKLCDSSLPSELQDKARVLLQ 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03087 1292 Gene3D - 986 1261 IPR027417 -
Bva04g03087 1292 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 259 1251 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bva04g03087 1292 Gene3D DNA repair protein MutS, domain I 305 468 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 Pfam MutS family domain IV 844 935 IPR007861 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 SUPERFAMILY DNA repair protein MutS, domain III 657 977 IPR036187 -
Bva04g03087 1292 MobiDBLite consensus disorder prediction 9 54 - -
Bva04g03087 1292 Coils Coil 212 232 - -
Bva04g03087 1292 MobiDBLite consensus disorder prediction 55 69 - -
Bva04g03087 1292 MobiDBLite consensus disorder prediction 230 267 - -
Bva04g03087 1292 Gene3D - 655 975 - -
Bva04g03087 1292 Pfam MutS domain II 473 628 IPR007860 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 SMART mutATP5 1035 1227 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 MobiDBLite consensus disorder prediction 179 199 - -
Bva04g03087 1292 MobiDBLite consensus disorder prediction 213 229 - -
Bva04g03087 1292 SUPERFAMILY Tudor/PWWP/MBT 101 141 - -
Bva04g03087 1292 SUPERFAMILY DNA repair protein MutS, domain II 471 669 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 Pfam MutS domain I 350 463 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 Coils Coil 922 942 - -
Bva04g03087 1292 SMART DNAend 674 1015 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 Pfam MutS domain V 1039 1229 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 MobiDBLite consensus disorder prediction 81 96 - -
Bva04g03087 1292 SUPERFAMILY DNA repair protein MutS, domain I 336 459 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 Gene3D MutS, connector domain 473 654 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 Gene3D - 89 152 - -
Bva04g03087 1292 Pfam MutS domain III 660 975 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bva04g03087 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1230 IPR027417 -
Bva04g03087 1292 Gene3D - 820 951 - -
Bva04g03087 1292 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 259 1251 - -
Bva04g03087 1292 MobiDBLite consensus disorder prediction 168 267 - -
Bva04g03087 1292 MobiDBLite consensus disorder prediction 1 98 - -
Bva04g03087 1292 PIRSF Msh6 2 1279 IPR017261 GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03087 Bva-Chr4 25513205 25521626 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03087 K08737 - gmx:100811104 1843.94