Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03052 ATGATGGATTCGTGCGAATGTATTGACTCACCATGGCCCCCGGATGAACTTCTTGTGAAATACCAGTATATCTCGGATGTGATGATTGCCCTTGCATATTTCTCAATTCCTGTggaacttatttattttgttcagaAGTCTGCATTCTTTCCCTATCGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTTTGCGGACTAACCCACTTCATAAGCTTGTGGACTTTCTCAATGCACACTAAAACTGTTGCTGTGGTGATGACAATTGCCAAAGTGTCATGTGCCATTGTATCATGTGCAACTGCACTAATGCTCGTCCACATTATTCCTGATCTTTTGAGTGTCAAAACTCGGGAACTGTTTCTTAAGAACAGAGCCGAAGAGCTTGATAGGGAGATGGGACTTATTCTTACCCAAGAAGAAACTGGAAGGCATGTTAGGATGTTGACTCATGAAATTAGGAGCACTCTGGATAGGCATACAATTCTCAAGACTACACTTGTTGAGCTGGGTAGGACTTTAGGCTTGGAGGAATGTGCATTGTGGATGCCATCAAGAAGTGGTGCCAATCTGCAACTTTCCCATACTTTAAGCCACCATGTACAAGTTGGGTCTACTGTGCAAACAAACCATCCTATTGTCAATGAAGTTTTCAATAGTCCTCGAGCAATGAGAATACCACACACCTGTTCACTGGCCAGGATTAGACCCCTTGTGGGGAGATACCTGCTACCTGAAGTTGTTGCTGTGCGGGTTCCTCTTTTACATCTCtccaattttcaaattaatgatTGGCCTGATCTTTCTGCAAAAAGTTATAGTTATGCAATCATGGTTCTGATCCTCCCCACTGACAGTCCTAGAAAATGGAGAGACCACGAGTTGGAACTTGTGGATGTTGTTGCAGATCAGGTAGCAGTGGCTCTTTCACATGCTGCTATTCTGGAGGAATCCATGCGAGCCCGTGATCAGCTCATTGAGCAGAATGTTGCTTTAGATTTAGCTCGACGAGAGGCGGAGATGGCAATCCATGCTCGCAATGATTTCCTTGCTGTCATGAATCATGAAATGAGGACACCAATGCATGCAATTATCGCATTGTCATCACTTCTTTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACTGTTTTAAAGAGCAGCAACGTTTTAGCAACACTCATTAATGATGTTCTAGATCTCTCTAGACTGGAAGATGGTAGCCTTGAGTTAGAAATGGGAAAATTCAACCTTCATGGGCTTCTGGGAGAGGTGATTAATCTGATAAAGCCTATAGCGTCTGTGAAGAAGTTACCTATGACTTTAGTTCTGGCTCCTGATGTACCAGTGTTTGCCATTGGTGACGAGAAACGGCTTATGCAAACTCTTCTAAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGATATGTTTCTATAAGAGCATCTGTTGCAAAACCAGAATGTTTACAAGATTGGCGACCTCCCGAGTTTTATCCAACGTCAAGTGATGGGCATTTCTACATAAGAGTACAGGTTAAGGATTCCGGATGTGGCATTCTCCCGCAAGATATTCCACTTCTTTTCACCAAATTTGCTCAGTCTCGAAGTGGACAAGCTCGTCCTAGCAGTGGTGCAGGGCTTGGGCTGGCCATATGTAAGAGATTTGTAAATCTCATGGGAGGTCACATTTGGATTGAGAGCGAGGGACTTGATAAAGGGACCACAACTACATTCATTGTGAAACTTGGGATTTGTGGTAATCCAGATTCCTTAGCGCACCAAGCTACCAACAGAGGTCAAGCGTACAGTGGAAGTGGAGACCTCACTGGCTATAAACCTTTTGCCAAAGATAATGATGAGCTAGCTTTTCCTAACAGACGTTACCAAAGAAGTCTTTA 1916 0.4285 MMDSCECIDSPWPPDELLVKYQYISDVMIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGLTHFISLWTFSMHTKTVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNRAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGANLQLSHTLSHHVQVGSTVQTNHPIVNEVFNSPRAMRIPHTCSLARIRPLVGRYLLPEVVAVRVPLLHLSNFQINDWPDLSAKSYSYAIMVLILPTDSPRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLIEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKFNLHGLLGEVINLIKPIASVKKLPMTLVLAPDVPVFAIGDEKRLMQTLLNVVGNAVKFTKEGYVSIRASVAKPECLQDWRPPEFYPTSSDGHFYIRVQVKDSGCGILPQDIPLLFTKFAQSRSGQARPSSGAGLGLAICKRFVNLMGGHIWIESEGLDKGTTTTFIVKLGICGNPDSLAHQATNRGQAYSGSGDLTGYKPFAKDNDELAFPNRRYQRSL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03052 638 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 458 588 IPR003594 -
Bva04g03052 638 Gene3D - 411 592 IPR036890 -
Bva04g03052 638 SMART HKATPase_4 458 592 IPR003594 -
Bva04g03052 638 CDD HisKA 344 407 IPR003661 GO:0000155|GO:0007165
Bva04g03052 638 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 332 412 IPR036097 GO:0000155|GO:0007165
Bva04g03052 638 SUPERFAMILY GAF domain-like 159 322 - -
Bva04g03052 638 PANTHER ETHYLENE RESPONSE SENSOR 1 2 637 - -
Bva04g03052 638 Gene3D - 312 410 - -
Bva04g03052 638 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 637 - -
Bva04g03052 638 CDD HATPase_EvgS-ArcB-TorS-like 463 588 - -
Bva04g03052 638 SMART HisKA_10 346 411 IPR003661 GO:0000155|GO:0007165
Bva04g03052 638 SMART gaf_1 159 320 IPR003018 GO:0005515
Bva04g03052 638 Pfam GAF domain 159 310 IPR003018 GO:0005515
Bva04g03052 638 Gene3D - 139 311 IPR029016 -
Bva04g03052 638 Pfam His Kinase A (phospho-acceptor) domain 347 411 IPR003661 GO:0000155|GO:0007165
Bva04g03052 638 PRINTS Bacterial sensor protein C-terminal signature 532 542 IPR004358 GO:0016310|GO:0016772
Bva04g03052 638 PRINTS Bacterial sensor protein C-terminal signature 514 528 IPR004358 GO:0016310|GO:0016772
Bva04g03052 638 PRINTS Bacterial sensor protein C-terminal signature 549 567 IPR004358 GO:0016310|GO:0016772
Bva04g03052 638 ProSiteProfiles Histidine kinase domain profile. 353 590 IPR005467 -
Bva04g03052 638 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 400 588 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03052 Bva-Chr4 25343816 25347438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03052 2 596 Miscellaneous Gene Families AT2G40940 76.639 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03052 K14509 - gmx:100802569 1099.35