Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02998 ATGAGACAACTCTCAGAGGCTGCATGTACTTTCTCCAACAAAATACTGAAACTGCTAAATGGTTGCACTTCTGCTAATCAACTCCACCAGATTCAAGCTCAAGTGATCGTTCAAACCCTCTTTTCAGACACCACAGTTGCTTGCCACTTCATCAATGTCTGCCAATCTCTAGGCCTGCTGAACTctgcttttcttctctttaccCTGCTTCCTAGACCCCATGTTTTCATTTGCAATTCTCTCATTAGAGCCTTGTCTCACTCGCGTATCCCTGATGTCCCTTTTGCTATATACACTAGTATGCATAAGAACTCTGTTCTTCCTAATAATTATAccttccctttccttttcaaatcTTTATCTGATTCGTTCAACTCAAGACAAGCACAATGCATTCATACCCATGTCGTAAAATTGGGTCATcttaatgatatttatgtcCAAAACTCACTGCTGGATGTGTATGCATCTTGTAGCCTTATGGGCTTCTGTCAACAGCTATTTGATGAAATGCTTCAAAGGGATGTTGCGTCATGGACAGTTTTGATTATGGGGTACAAGAATGCTGGGAAGTATCACGATGCCTTGATTGTTTTTGAACAGATGCAATATGCTGGTGTAGTGCCGAACCGTGTGACAATGATAAATGCCTTAGCTGCTTGTGCAAATTTTGGTGCAATTGAAATGGGTATTTGGATACATGATGTTATAAAGAAGAGCGGATGGGAGCTGGATGTCATACTGGGGACGGCATTGATTGAAATGTATGCAAAATGTGGGAGAATTGACGAGGCATTGAGTGTCTTTAGAagcatgaaagaaaagaatgtatTCACATGGAATGTAATTATTAAAGGACTAGCCCTAACTAAAAGCGGGGAGGAAGCAATTCGGTGGTTTAGAAGAATGGAGCAAGAAGGATTCAGGGCAGACGAAGTAACGTTGGTAGTAGTGCTTTCTGCATGTAGTCACTATGGTCTGGTGAACATAGGCCGGCAGATCTTTGGTTCGTTTATTGGTGGCAAGTATGGATTTTCTCCTAATTTCAAACATTATGCCTGTATGGTCGACCTCTTAGCACGTGCTGGGCGCCCAAAAGAAGCTTTTGAATTCATAAGAGGTATGCCTTTTGAGCCTACAAAAGCTATGTGGGGATCCCTGTTGGCTAGTTCCAAATCAAGGGGAGACCTAGAATTCAGTGAATTCGCTGCCAGAAAACTAGTAGAATTGGAGCCAGATAATACTGCTTATCATATTCATCTATCTAATCTGTATGCTGAGATGGGAAGATGGAGCGATGTTGAAAAAGTAAGGACAATGATGAAAGATAGAGGACTGACGAAGGACTTAGGATATAGTTCTGTGGAGCTTGGACCCCAAGAGCATGCTTATGTATTATG 1400 0.3964 MRQLSEAACTFSNKILKLLNGCTSANQLHQIQAQVIVQTLFSDTTVACHFINVCQSLGLLNSAFLLFTLLPRPHVFICNSLIRALSHSRIPDVPFAIYTSMHKNSVLPNNYTFPFLFKSLSDSFNSRQAQCIHTHVVKLGHLNDIYVQNSLLDVYASCSLMGFCQQLFDEMLQRDVASWTVLIMGYKNAGKYHDALIVFEQMQYAGVVPNRVTMINALAACANFGAIEMGIWIHDVIKKSGWELDVILGTALIEMYAKCGRIDEALSVFRSMKEKNVFTWNVIIKGLALTKSGEEAIRWFRRMEQEGFRADEVTLVVVLSACSHYGLVNIGRQIFGSFIGGKYGFSPNFKHYACMVDLLARAGRPKEAFEFIRGMPFEPTKAMWGSLLASSKSRGDLEFSEFAARKLVELEPDNTAYHIHLSNLYAEMGRWSDVEKVRTMMKDRGLTKDLGYSSVELGPQEHAYVL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02998 466 Gene3D Tetratricopeptide repeat domain 11 138 IPR011990 GO:0005515
Bva04g02998 466 Gene3D Tetratricopeptide repeat domain 139 226 IPR011990 GO:0005515
Bva04g02998 466 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 457 - -
Bva04g02998 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Bva04g02998 466 PANTHER - 10 457 - -
Bva04g02998 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Bva04g02998 466 Pfam PPR repeat family 175 219 IPR002885 -
Bva04g02998 466 Pfam PPR repeat family 275 323 IPR002885 -
Bva04g02998 466 SUPERFAMILY TPR-like 179 433 IPR011990 GO:0005515
Bva04g02998 466 Pfam PPR repeat 352 375 IPR002885 -
Bva04g02998 466 TIGRFAM PPR: pentatricopeptide repeat domain 250 276 IPR002885 -
Bva04g02998 466 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Bva04g02998 466 TIGRFAM PPR: pentatricopeptide repeat domain 178 210 IPR002885 -
Bva04g02998 466 Pfam E motif 396 456 IPR046848 -
Bva04g02998 466 Gene3D Tetratricopeptide repeat domain 227 341 IPR011990 GO:0005515
Bva04g02998 466 Gene3D Tetratricopeptide repeat domain 342 456 IPR011990 GO:0005515
Bva04g02998 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02998 Bva-Chr4 25123317 25125420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02998 30 464 Glycoside Hydrolase AT3G49170 30.455 1.60e-64 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02998 - - qsu:112033573 687.952