Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02980 ATGAGTGGCTTAATGACGAGCTTGTCAGCTCGAATATGCACTACGCGTTGCGACCTAATCCCCGTAAGACACCGTCTGCTTCACCAATCGGTTAAAAGATGCCTTACTCTTCCACCTCGAACCAAACTCAGATCTCCAAGAATTGTGTGCATGGCGGCGGAACCTTATTTGATAACAAAACTTGAATCCGCCCAGAAGACATGGAAAGAATTATCCgtCAAGCTTGCTGATCCAGACGTTGTGTCCAATCCCAGTGAGTACCAAAAATTGGCACAATCAATGGCCGATCTTGATGAGGTTGTGTCGACTTACAGGAAATTTAAGGACTGTGAAAAGCTGCTAGAAGAAACTAAAGCATTAGCAAAGGATAATGGCAATGATGAGGATATGGCAGAAATGATAGCTTCTGAAATTGAGTCCTTGTCCAGGGAGATCGGCGAGCTTGAGGAGAAGCTTAAGGTCCTACTGCTTCCCAGTGATCCTCTTGATGCGAAAAATATAATGCTTGAAGTACGAGCAGGTACTGGTGGGGATGAGGCTGGACTTTGGGCTGGTGATCTTGTCCGAATGTATCAAAAGTATTCTGAGCTGAACTCTTGGAAGTACTCACTTGTCTCAAGCTCTGAGGCAGAAAAAGGAGGGTTCAAAACTTATGTGATGGAGGTCAAAGGAAATCATGTCTAcagcaaattaaaatatgagtcTGGTGTCCATCGAGTTCAACGTGTTCCTCAAACGGAAGCACAGGGTCGTGTACATACTTCAACTGCAACAGTGGCCATCATGCCCGAGGCTGATGAAGTTGATGTTGTGATCGACCCAAAAGATGTTGAACTTACAACAGCTCGTTCTGGTGGTGCTGGAGGGCAGAATGTGAACAAGGTGGAAACAGCTGTTGATCTTTTCCACAAACCAACAGGAATACGTATCTTTTGTACTGAAGAAAGGACTCAACTCAAGAACAAAAATCGTGCTTTTCAGTTGCTCCGTGCAAAACTATATGAGATTAAGTTAAGGGAGCAGCAAGAATCATTAAGAAATCAACGGAAATCACAGGTTGGTACAGGTGCTCGTGCAGAAAAAATTCGGACATATAATTACAAGGACAACAGGGTTACTGACCATCGGCTGAAGATGAACTTTGAGCTCACCTCTTTTCTTAACGGCGACATAGAAAATGCAGTTCAGTCTTGTGCTGCGATGGAGCAAAAGGAGCTTCTGGAAGAACTTGCCGAATCCGCAGGTGCTCTAGCTGGGTG 1259 0.4408 MSGLMTSLSARICTTRCDLIPVRHRLLHQSVKRCLTLPPRTKLRSPRIVCMAAEPYLITKLESAQKTWKELSVKLADPDVVSNPSEYQKLAQSMADLDEVVSTYRKFKDCEKLLEETKALAKDNGNDEDMAEMIASEIESLSREIGELEEKLKVLLLPSDPLDAKNIMLEVRAGTGGDEAGLWAGDLVRMYQKYSELNSWKYSLVSSSEAEKGGFKTYVMEVKGNHVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVDVVIDPKDVELTTARSGGAGGQNVNKVETAVDLFHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEIKLREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLNGDIENAVQSCAAMEQKELLEELAESAGALAG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02980 419 SUPERFAMILY Release factor 66 407 IPR045853 -
Bva04g02980 419 Gene3D - 45 161 - -
Bva04g02980 419 Pfam RF-1 domain 266 376 IPR000352 GO:0003747|GO:0006415
Bva04g02980 419 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 283 299 IPR000352 GO:0003747|GO:0006415
Bva04g02980 419 Coils Coil 331 351 - -
Bva04g02980 419 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 9 416 - -
Bva04g02980 419 Coils Coil 131 151 - -
Bva04g02980 419 SMART PCRF_a_2 119 234 IPR005139 GO:0006415
Bva04g02980 419 TIGRFAM prfA: peptide chain release factor 1 54 412 IPR004373 GO:0006415|GO:0016149
Bva04g02980 419 Gene3D - 274 336 - -
Bva04g02980 419 PANTHER LD18447P 9 416 - -
Bva04g02980 419 Pfam PCRF domain 65 259 IPR005139 GO:0006415
Bva04g02980 419 Hamap Peptide chain release factor 1 [prfA]. 57 411 IPR004373 GO:0006415|GO:0016149
Bva04g02980 419 Gene3D - 163 273 - -
Bva04g02980 419 Gene3D - 337 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02980 Bva-Chr4 25035171 25040213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02980 K02835 - gmx:100805037 664.455