Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02944 ATGAAGCAGGTGTGGAAACTCTCAGCCGCTCGCAGAATAACTGCAAAACCGATAACCCTTCACCATTTATCTTCATTCCTAGAAAGTTCAGAAAATTACAGATGCACCCGCGAATTCAATGCTCAGAGTCAATACTCCAAACCCTCCATCTTCCAACCTATTGTTGGCTTGTTCTCACACCCTCCTTCTCCCTTTGATGCATTAGCCAGAGAGAACCTGAATAGGAAAGTCACGATTTTGAGGGACGAGCTGGTTCGGGTAGCGCAGGACTCTGATGGCGTACACAGGATTTTGGAGGAGAATCTTGAACCTTTGTTTCGTAAGTACCCTGAGGGAGTCGCATTTGTTGAGCTTCTGTGCCAGTTGGGTTTACGGCGTCAGTTGCTCCTAGAGGTAATCaattggagaagaaaaagttcTGATGGTGGCACTCCCATGACTAAAATAGAGTATACCAAGAGTATCAAAATTGCCGGTAAAGCTGGAAATATCGATCTTTCCATTGAACTCTTTGATGAGGCTGCTAGTAAAGGACTCAAAACAACTGCCACTTATAACGCACTGATGAGTGCTTTTATGTTCAACGGTCTTGCTGATAAATGTCAGTCAACATTTCATGATATGAAGAGGGATGCAACTTGTGTGCCTACCATTGTAACATACAACATTCTTATCTGTGTTTTTGGTCGGTTGCTGCTAATTGATCGCATGGAAGCAGCATTCACGGAGATATATGATTTAAACATCGCCCCTAATATAAGGACTTATAATAGTTTAATTGCTGGATATGTTACAGCTTGGATGTGGGATCGTATGGAAAAGACTTTTCATATGTTGCAGTCAAGCCTTGTCAAACCTGACATCGAGACCTACCTGCTAATGCTACGTGGGTATGCTCATTCAGGTAATCTAGAGAAGATGGAACAAACATATCTATTGGTAAAGAATCATGTAAATGAAAAGCAAATTTCATTGATCAGGTGCATGATATGTGCATATTGTAGAAGTTCTGCTGCAAATAGAGTTGAGAAGATAGAGGCATTATTGAAGCTTATTCCAGAAGAAGACTACAAACCATGGttaaatgtgtttttaattAGGCTTTATGCTCAAGAGGACTGGTTAGAGGAAATGGAGAATTCAATAAATGAGGCTTTTGAGCATGGAACTTCTGTACTGTCCCATCGTGTAATGAAATGTATTATTGCAACTTATTTTCGGTGCAATGCATTGGACAgactttcaaattttgtgaAGCGGGCAGAATGTGCTGGGTGGAGAATCTGCCGTTCCCTATACCATTGTAAGATGGTCATGTATTCATCACATGAACGTCTAGAGGACATGGAAAGTGTCCTCAGTGAGATGGGAAATTTCAACTTAGATCAcacaaagaaaacattttggATTATGTACAAGGCTTATTTAAGATGTGGTCAAAGATCTAAggttgagaaaatattaggATTGATGTTCAAGCATGGGTATGAAATTCCATTGAGTGCGTTCCTATCATA 1517 0.3869 MKQVWKLSAARRITAKPITLHHLSSFLESSENYRCTREFNAQSQYSKPSIFQPIVGLFSHPPSPFDALARENLNRKVTILRDELVRVAQDSDGVHRILEENLEPLFRKYPEGVAFVELLCQLGLRRQLLLEVINWRRKSSDGGTPMTKIEYTKSIKIAGKAGNIDLSIELFDEAASKGLKTTATYNALMSAFMFNGLADKCQSTFHDMKRDATCVPTIVTYNILICVFGRLLLIDRMEAAFTEIYDLNIAPNIRTYNSLIAGYVTAWMWDRMEKTFHMLQSSLVKPDIETYLLMLRGYAHSGNLEKMEQTYLLVKNHVNEKQISLIRCMICAYCRSSAANRVEKIEALLKLIPEEDYKPWLNVFLIRLYAQEDWLEEMENSINEAFEHGTSVLSHRVMKCIIATYFRCNALDRLSNFVKRAECAGWRICRSLYHCKMVMYSSHERLEDMESVLSEMGNFNLDHTKKTFWIMYKAYLRCGQRSKVEKILGLMFKHGYEIPLSAFLS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02944 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Bva04g02944 505 Gene3D Tetratricopeptide repeat domain 365 505 IPR011990 GO:0005515
Bva04g02944 505 PANTHER OS05G0407900 PROTEIN 13 504 - -
Bva04g02944 505 Coils Coil 70 90 - -
Bva04g02944 505 PANTHER EXPRESSED PROTEIN 13 504 IPR044179 GO:0003729
Bva04g02944 505 Pfam PPR repeat family 251 299 IPR002885 -
Bva04g02944 505 Pfam PPR repeat family 181 226 IPR002885 -
Bva04g02944 505 Gene3D Tetratricopeptide repeat domain 147 343 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02944 Bva-Chr4 24861191 24864402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02944 160 394 Miscellaneous Gene Families AT4G11690 23.656 4.47e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02944 - - jre:109002207 611.298