Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02889 ATGCATAAGAAAATATCTGGGCTGGGCTGCGGGATTTTCTGGAGTCTACGAGCCGTCAGTTCAGTGGCACTGCACAAGTTGGCTGCATCTGTCTCTCCCGTTGATGCTGCTCTTCCATCACCAACTTCCCAGgTGTCGGTAGATGTCGGTTTGGATATTGCTCGAGATCTCCTCAGAGATGCCGATCAGTATCTTCTTGAGGGCCTTAAGCGTCTCTGTGAATATACCATTGCACGAGGTAAGAGATACCTCTTCCTTACAGAAGGAGAGACAGAAACGAGCGAAGAAGAGAGCAGAAGCAGCGCGATGAGTGTTGAAGTGTTAGGCTTATGGGTGCCCAAGTCCTGTTGTTCTATGCTTGGCCAATTTGTTCCTAGTCCTAAGCGAGGCAGATTCTCCCCAGCAGCTCTATCAGCCACATCAACACACTCGCCCCAATCTTCCTCCATTCAGATAGTTGGTGTGAAAAGTCCAAGTTGGAGTGGAAATGGATATGGCAATTCCAACACAATCGATGGCTTTGAAGGGGAGAGTGATTGGACTGGTCTTGAAGCTGATCTTTACCACTGGACAAAGGCATTGCGCCCAGTGCAGTGGTATCCTGGTCACATtgcaaaaacagaaaaagaacttAAGGAGCAGCTCAAGTTGATGGATGTTGTCATAGAAGTTCGAGATGCCCGTATTCCCATGTCCACCAGTCATCCACAGATGGATTTATGGCTTGGCAATAGAAAAAGgattttggttttgaataGAGAGGACATGATATCCGTGGCAGACCGCAATGCTTGGGCAACGTATTTTGCTAGGCAAGGCACAAAGGTTGTCTTCTCCAACGGGCAACTTGGAATGGGCACAATGAAGCTAGGTCGGTTAGCAAAGTCATTAGCAGCTGACGTAAATGTTAAACGTAGAGCCAAAGGACTACTTCCTCGTCCGGTTCGAGCTGGAGTAGTTGGATATCCTAATGTTGGGAAATCATCCTTGATCAACCGATTGTCAAAGCGAAGAATGTGTCCAGCAGCTCCCAGGCCGGGTGTCACTAGAGAATTGAGGTGGGTCCGTTTCGGGGAAGATCTTGAATTACTTGACTCTCCTGGGATAATCCCAATGCGAATCAGTGATCAGTCAGCTGCTATAAAACTCGCCATATGCGACGACATTGGGGAGCGATCCTATGATGCTGCTGATGTTGCTGCAATTCTTGTCCAGATGCTTACAAGGCTTCCCTCCGTAGGTGGAGATGCTTTTCGTAAACGGTACAAGATTGATGTAGACAGTCACTCCGGTAAAATATTTGTAGAAAAGCTTGCGCTTCAGGTCTTTAATGGAGATGTTCATCAAGCAGCATACCGTGTCCTGGCAGATTTTCGGAAAGGCAAGTTTGGTTGGATTGCACTGGAGAGGCCACCTAGTTG 1421 0.468 MHKKISGLGCGIFWSLRAVSSVALHKLAASVSPVDAALPSPTSQVSVDVGLDIARDLLRDADQYLLEGLKRLCEYTIARGKRYLFLTEGETETSEEESRSSAMSVEVLGLWVPKSCCSMLGQFVPSPKRGRFSPAALSATSTHSPQSSSIQIVGVKSPSWSGNGYGNSNTIDGFEGESDWTGLEADLYHWTKALRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPMSTSHPQMDLWLGNRKRILVLNREDMISVADRNAWATYFARQGTKVVFSNGQLGMGTMKLGRLAKSLAADVNVKRRAKGLLPRPVRAGVVGYPNVGKSSLINRLSKRRMCPAAPRPGVTRELRWVRFGEDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDAADVAAILVQMLTRLPSVGGDAFRKRYKIDVDSHSGKIFVEKLALQVFNGDVHQAAYRVLADFRKGKFGWIALERPPS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02889 473 Pfam 50S ribosome-binding GTPase 317 404 IPR006073 GO:0005525
Bva04g02889 473 TIGRFAM GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 197 469 IPR019991 -
Bva04g02889 473 Gene3D - 375 463 IPR023179 -
Bva04g02889 473 PRINTS GTP1/OBG GTP-binding protein family signature 317 337 IPR006073 GO:0005525
Bva04g02889 473 PRINTS GTP1/OBG GTP-binding protein family signature 363 378 IPR006073 GO:0005525
Bva04g02889 473 CDD YlqF 199 369 - -
Bva04g02889 473 Gene3D - 197 370 IPR027417 -
Bva04g02889 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 386 IPR027417 -
Bva04g02889 473 PANTHER DAR GTPASE 3, CHLOROPLASTIC 134 473 - -
Bva04g02889 473 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 134 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02889 Bva-Chr4 24615749 24621883 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02889 K19828 - gmx:100784201 580.482