Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02867 ATGGAAGACGGGGAGACGAACAAAGATGTTGAAGTGGCTCCTGCGCTGATTGCAGTTCAACCAAACCAAAGATCTGTTGCCGTCGCCGTTGGAGCAGACTTGCGTGTCTTCAACCTCCATGCTGGTTCTGCTGCTTCTTTAGTTGATGAATCTGGAAGCTCATTTCATAAGGATTTTATAAGAGCTATTCGGTTTGGTGCAAAAGGGAAGCTCTTTGTATCTTCTGGCGATGACAAAATTGTCAAGATATGGTCAGTGGAATATTGGCGGTGCATATGTACTGTGTCCTCGGAAAAAAGGGTTACTGCAGTCGCCATAAGCAACGATGGTTCATATGTCTGTTTTGCTGACAAATTTGGGGTTGTCTGGGTTGTGGATCTGACTGGATATGATGGCAATCAACCGTTAGTTAACAAGAAAGCAACACCACTGCTTTCTCACTATTGTAGTATCATCACCAGCTTGGAATTTTCACTGGATGGTCAGTTTATTGTTAGTGCTGATCGGGATTTTAAAATCCGTGTTACTGTTTTTCCGAGTAACCCCATAAATGGAGCTCATGAGATACAGAGTTTCTGTCTTGGTCATACAGAGTTTGTCTCCTGCGTGGCCTTTGTTCAGGCTCAGGATTACCCTCATGGCCTTCTTATCTCCGGGAGTGGTGATTCGACAgtGCGATTATGGGATATAGTGTCTGGAGCACTTCTAGATACGTGTGAAGTCGCGACAAAGGCAGGACTTTTAGAGTCTAATAATGATAAGTCAGAGGAACGTGACCATGCTGTTACTGATTTATGCACCATCTTGGATGGTTTGCTAATTGCTGTGGCCATCCAGAGCTTTCAAGGAATAGTATTATTGAAATGCAACCCTGCGACACGAACACTTTCTGTTTCTAAGTTGGTTTCTATTGAGGGAGGGGCCTTCGTCCCTACCAGCCTCGGCAATGGCGCCTCTACGGGGATATTGTGGATGGTTACAGGTGTCTCTAATTTACCTGGTTCTTCTTGCCCCTCTTTTGCTCGTGTCCGGGCAATTTCTGGTTTTGATGTTGAGCAAGAGCCAACCGTCGTGGAACATGATAAGATACCTGGTGGAGAGCAGCTGCTAGAAAATTTGCAGGGAAGTGCATCTGTTGATGATGCTGTTTTCCTGGCAGCTGCAGAAGCTGTGAAAACAGCAATGTGcaatctattaattaaaaagcaaTACCCTGCAGAGAACAGAGAATCCAAGAAGAGAACCagaaatgataaaaagttCAAACTGTA 1271 0.439 MEDGETNKDVEVAPALIAVQPNQRSVAVAVGADLRVFNLHAGSAASLVDESGSSFHKDFIRAIRFGAKGKLFVSSGDDKIVKIWSVEYWRCICTVSSEKRVTAVAISNDGSYVCFADKFGVVWVVDLTGYDGNQPLVNKKATPLLSHYCSIITSLEFSLDGQFIVSADRDFKIRVTVFPSNPINGAHEIQSFCLGHTEFVSCVAFVQAQDYPHGLLISGSGDSTVRLWDIVSGALLDTCEVATKAGLLESNNDKSEERDHAVTDLCTILDGLLIAVAIQSFQGIVLLKCNPATRTLSVSKLVSIEGGAFVPTSLGNGASTGILWMVTGVSNLPGSSCPSFARVRAISGFDVEQEPTVVEHDKIPGGEQLLENLQGSASVDDAVFLAAAEAVKTAMCNLLIKKQYPAENRESKKRTRNDKKFKL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02867 423 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Bva04g02867 423 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 415 IPR028884 GO:0036265
Bva04g02867 423 PANTHER WD40 REPEAT PROTEIN 4 15 420 IPR028884 GO:0036265
Bva04g02867 423 SMART WD40_4 47 85 IPR001680 GO:0005515
Bva04g02867 423 SMART WD40_4 138 177 IPR001680 GO:0005515
Bva04g02867 423 SMART WD40_4 88 126 IPR001680 GO:0005515
Bva04g02867 423 SMART WD40_4 185 229 IPR001680 GO:0005515
Bva04g02867 423 Gene3D - 99 280 IPR015943 GO:0005515
Bva04g02867 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 230 - -
Bva04g02867 423 SUPERFAMILY WD40 repeat-like 54 278 IPR036322 GO:0005515
Bva04g02867 423 Gene3D - 14 98 IPR015943 GO:0005515
Bva04g02867 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 87 IPR001680 GO:0005515
Bva04g02867 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 87 - -
Bva04g02867 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
Bva04g02867 423 Pfam WD domain, G-beta repeat 55 85 IPR001680 GO:0005515
Bva04g02867 423 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515
Bva04g02867 423 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02867 Bva-Chr4 24524175 24527692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02867 164 240 Acyl Lipid Metabolism Gene Families AT3G18860 35.443 2.65e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02867 K15443 - gmx:100786310 595.504