Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02735 ATGGCGTCTCCGTATCCGCCACTCAAACCTGTTACTGCCGCTGAGGTGGGTTCGTACTTCGTCGCTAGGTACTATCAAGAACTTCAGAAAAATCCCGAGCAGGTTCATCAGTTCTACTCTGATTCCAGTACTATGATTCGTGTTGATGGAGATTCCAGCCAGTCCGCCTCTGCCCTGCTGCAAATTCATACGCTGCTCCTGTCACTGAATTATAATGGAATTGAGATCACTACAATCAATTCGCTTGATTCTTGGAATCGTGGAGTCCTTGTGGTGGTCTCAGGTCTGGTTAAGATCAGGGATGAGAAGAGGAAGTTTGTCCAAACCTTTTTCCTTGCTCCTCAGGAAAATGGTTACTTTGTGCTGAATGATATTTTTCAGTTCAATGATGATGAAGTGATCTACCCAAATCCGGTATCAATGGCATCTGAAAATATTGAGACACAACTCAATGCATCTAATTCTCTTGCAGAGCCATCTGCAGCTTCAGACTACAGTTTGGAGGAAGAGGCCAGCAAATATGTTGACTCAGTTCATATGGAAGACGATCCATTGGACAAGTACAATCTTCCagagcagcagcagcagctaCAACAGGATCTTGAAACTGAAGATGTGGTGGAAGAAACTCCTGCAGAGGAGGCATCTCCATCAATTCAAACTGTGAGGCATACAATCAACGAACCCCCTGTAGCTCCCATTGAGGATCCTGTGGAAGAACCGGCTAAGAAGACTTATGCATCTATTTTACAAATCTCTAGAGTAAAAGCTGTGTTGCCTGCTGCTCCACAACCATCTTTTAAAAGTGCTCCACCCTCTTCAGAGTTAAATCTTGCTGATCAGCAGTCAAGTTCTGCATCTATATCTGTTTCTCACTCTGTTGTCATGCCAGCAGATGAAGGCTTTGGACTAGAAGAAGGTGAAGTAAAATCTGTTTATGTGAGAAACTTGCCTGCTACTATTACTGAAGCTGAGATTGAAAACGAGTTTAAGAACTTTGGCCGAATTAGGCAGGATGGAATATTCATAAGAGTCCGAAAGGAAATTAATGCTTGCTATGCTTTTGTGGAGTTTGAAGACATTCTTGGTGTTCAAAATGCCCtccagGCTTCTCCCATAGAGTTGGCTGGAAGACAAGTATTCATAGAGGAGCGGAGACCAAACAGTGGCAGCACGGCAAGGGGAGGAAGACGGGGAAGAGGCAGAAACAGTTATCAAACAGATGCTCCAAGAGGGCGTTTTGGTGCTCGGAGTTTGGGTAGAGGAAGTAATCAAGATGCTGGTGACTACAATAGATTCAGAGGCAACGGTTATCCTCAATATGGTTCGCGATA 1334 0.434 MASPYPPLKPVTAAEVGSYFVARYYQELQKNPEQVHQFYSDSSTMIRVDGDSSQSASALLQIHTLLLSLNYNGIEITTINSLDSWNRGVLVVVSGLVKIRDEKRKFVQTFFLAPQENGYFVLNDIFQFNDDEVIYPNPVSMASENIETQLNASNSLAEPSASDYSLEEEASKYVDSVHMEDDPLDKYNLPEQQQQLQQDLETEDVVEETPAEEASPSIQTVRHTINEPPVAPIEDPVEEPAKKTYASILQISRVKAVLPAAPQPSFKSAPPSSELNLADQQSSSASISVSHSVVMPADEGFGLEEGEVKSVYVRNLPATITEAEIENEFKNFGRIRQDGIFIRVRKEINACYAFVEFEDILGVQNALQASPIELAGRQVFIEERRPNSGSTARGGRRGRGRNSYQTDAPRGRFGARSLGRGSNQDAGDYNRFRGNGYPQYGSR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02735 443 SUPERFAMILY RNA-binding domain, RBD 294 414 IPR035979 GO:0003676
Bva04g02735 443 MobiDBLite consensus disorder prediction 194 218 - -
Bva04g02735 443 CDD RRM_SF 311 382 - -
Bva04g02735 443 SUPERFAMILY NTF2-like 12 131 IPR032710 -
Bva04g02735 443 PANTHER GB|AAD20086.1 11 437 - -
Bva04g02735 443 ProSiteProfiles Nuclear transport factor 2 domain profile. 16 128 IPR018222 -
Bva04g02735 443 Gene3D - 302 437 IPR012677 -
Bva04g02735 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 369 IPR000504 GO:0003723
Bva04g02735 443 Gene3D - 8 132 - -
Bva04g02735 443 SMART rrm1_1 310 382 IPR000504 GO:0003723
Bva04g02735 443 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 11 437 IPR039539 -
Bva04g02735 443 CDD NTF2 12 130 IPR018222 -
Bva04g02735 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Bva04g02735 443 Pfam Nuclear transport factor 2 (NTF2) domain 16 128 IPR002075 -
Bva04g02735 443 MobiDBLite consensus disorder prediction 383 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02735 Bva-Chr4 23806912 23811737 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02735 - - gmx:100787900 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02735 04 23806912 23811737 Bva04g02735 04 23806912 23811737 ECH