Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02718 ATGGAGGATTCATCTGAGGTTATTGGCTCAAAAGGCTTGATTAGGAAGCATGAATTTGTTAGGATCATCATCCAGTGCCTATATTCGTTAGGGTACAGTAAATCAGCATCTTGTTTGGAACTGGAATCTGGTATTTCATACAAGTCCACACAATTTCAGTTGCTTGAATTACAGATACTTAATGGAGATTGGGATGGCTGCATCAATACTATTAATATCATAAAGGATATGTTGGATGAAACCAGAGCATCGGTTCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATCTGTATTGTGGTGAGTATAGTCTAGCTTTGGATGTATTAAGGAAGAAGGTTGCTTCATTGCATGTCGACAAGTACAAGGTTCACAGCCTGGCCAATAGCATGCTTTCTCTTAAGGATGTGGAGCTCAGTAAAATCAATGGTGTTGTTGATGATTTGAGAAGGAAGTTGATAAATGATTTGGAAAAAGTGCTCCCTCCACCAATTACAGTACCTGAAAGAAGATTGGAACATTTAGTTGAAACTACTGTTACATCCTGGACTGATTCTTGTCTGTATCACAGTTCATCTAATGCTATTTCACTTTATGAAGATCATTGTTGTGGTAGGGATCAGATTCCTACAGAAACTATTCAGATTCTGACTGAACATAAACATGAAGTTTGGTTTGTGCAATTTTCTAATAATGGGCACTACCTAGCTTCTTCATCCTATGATTGTACGGCCATTATATGGAAGGTGCTCGAGGATGGGAAATTGACGTTGAAACACACACTAAGCAGTCATCAAAACCCTGTATCTTTTGTATCATGGAGTCCAGATGACACAAAATTACTCACATGTGGAAATGCAGAAGTCTTGAAGCTGTGGGATGTTGAAGCAGGCATATGCAAGCACACATTTGGGGATAATCGCTTCACCGTGAGCTCTTGTGCCTGGTTTCCAGACTCGGAGCATTTTTTTTGTGGCAGTTCTGATCCTGAAAAGGGCATTTGCATGTGGGATTGTGATGGAAATGAGATTAAAGCATGGAGAGGAATGAGGATGCCCAAAGTTATCGATCTTTCTGTGACACCTGATGGGGAGTATCTTATCGGCATATTCTTGGATAAAGACATTCGGATTTTGCATTTGGGAACCAATGCTGAGCGAGTCATTTCAGAGGAGCACCCGATCACATCTCTTTCAATTTCAGGAGATAGCAAGTACTTCATTGTCAACCTAAACAGCCAGGAGATTCATATGTGGGATGTGGGTGGTAAATGGGATAAACCATTGAAGTATATGGGCCACAAACAACACAAATATGTGATAAGGTCATGCTTTGGTGGATTAGATAGCACATTCATTGCCAGTGGCAGCGAGAATTCACAGGTATACATCTGGAACCGCCGAAACTCTTCTCCTATTGAGGTTTTGTCTGGGCATTCCATGACTGTGAACTGTGTGAGCTGGAACCCTAAACAACCACGAATGTTGGCATCTGCAAGTGATGATCATACAATTCGTATATGGGGATCTAGATTATCACAAAGTAATGCAAATTG 1556 0.4068 MEDSSEVIGSKGLIRKHEFVRIIIQCLYSLGYSKSASCLELESGISYKSTQFQLLELQILNGDWDGCINTINIIKDMLDETRASVLFLVFRQCLLEYLYCGEYSLALDVLRKKVASLHVDKYKVHSLANSMLSLKDVELSKINGVVDDLRRKLINDLEKVLPPPITVPERRLEHLVETTVTSWTDSCLYHSSSNAISLYEDHCCGRDQIPTETIQILTEHKHEVWFVQFSNNGHYLASSSYDCTAIIWKVLEDGKLTLKHTLSSHQNPVSFVSWSPDDTKLLTCGNAEVLKLWDVEAGICKHTFGDNRFTVSSCAWFPDSEHFFCGSSDPEKGICMWDCDGNEIKAWRGMRMPKVIDLSVTPDGEYLIGIFLDKDIRILHLGTNAERVISEEHPITSLSISGDSKYFIVNLNSQEIHMWDVGGKWDKPLKYMGHKQHKYVIRSCFGGLDSTFIASGSENSQVYIWNRRNSSPIEVLSGHSMTVNCVSWNPKQPRMLASASDDHTIRIWGSRLSQSNAN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02718 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 476 508 IPR001680 GO:0005515
Bva04g02718 518 CDD WD40 214 508 - -
Bva04g02718 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 476 518 - -
Bva04g02718 518 SMART WD40_4 297 338 IPR001680 GO:0005515
Bva04g02718 518 SMART WD40_4 340 380 IPR001680 GO:0005515
Bva04g02718 518 SMART WD40_4 382 420 IPR001680 GO:0005515
Bva04g02718 518 SMART WD40_4 255 294 IPR001680 GO:0005515
Bva04g02718 518 SMART WD40_4 469 509 IPR001680 GO:0005515
Bva04g02718 518 SMART WD40_4 424 466 IPR001680 GO:0005515
Bva04g02718 518 SMART WD40_4 210 249 IPR001680 GO:0005515
Bva04g02718 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Bva04g02718 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 250 IPR001680 GO:0005515
Bva04g02718 518 SMART Lish 15 47 IPR006594 GO:0005515
Bva04g02718 518 Pfam WD domain, G-beta repeat 258 294 IPR001680 GO:0005515
Bva04g02718 518 Pfam WD domain, G-beta repeat 432 466 IPR001680 GO:0005515
Bva04g02718 518 Pfam WD domain, G-beta repeat 213 249 IPR001680 GO:0005515
Bva04g02718 518 Pfam WD domain, G-beta repeat 472 508 IPR001680 GO:0005515
Bva04g02718 518 PANTHER WD REPEAT PROTEIN 26-RELATED 4 510 - -
Bva04g02718 518 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Bva04g02718 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 250 - -
Bva04g02718 518 SUPERFAMILY WD40 repeat-like 208 508 IPR036322 GO:0005515
Bva04g02718 518 SMART ctlh 48 105 IPR006595 -
Bva04g02718 518 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Bva04g02718 518 Gene3D - 206 511 IPR015943 GO:0005515
Bva04g02718 518 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02718 Bva-Chr4 23729808 23733649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02718 211 368 Miscellaneous Gene Families AT5G08390 25.949 1.60e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02718 K22382 - gmx:100818922 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02718 04 23729808 23733649 Bva04g02718 04 23729808 23733649 ECH