Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02650 ATGCTCTACATGCCTCTTTCATCTGCCGTCTTAGCCTCTGTCGATACGATCTATAAAAATCGCAAAACTCATCTGCAAACCTCTCTTGCGTTAGAAAGGGTTAGGAAGAGATCAGTTTCTGCGACTATAAACTCCGGAGGAATGCCTCGCCATGATGATAGATATGGTAACACCCGTCTCTATGTGGGACGGTTGTCTTCGAGGACCCGTTCACGTGATCTGGAGCGAGTCTTCAGCAGATATGGAAGGTTTCCGGGCTTTTGCCTAAACCTGGAGGTCTATGGTGAGAGGGTCACCGCCTTGGTGGAATTGGTGGAAATTTCTGCCGAAATTCGAGATGTGGATATGAAGCATGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCTGACGATGCAAGATATAGTTTAGATGGGCGTGACGTAGACGGAAGTCGGATAATTGTGGAGTTTGCTAAAGGGgGTCCGCGTGGTTCTCGGGAGTATCTGGGTAGAGGTCCTCCTCCTGGATCTGGCCGCTGCTTTAATTGTGGCATTGATGGTCACTGGGCCCGAGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGCCATATAGAAAGAAACTGCAAGAATAGTCCCAAGAAGTTGAGTAGACATGCACGTAGTTATTCGCGTTCACCTGTCAGGTCGCGCTCTCCTCGCCGTGGTAGAAGCCGTGAACGAAGTTACAGCCGTGACCGCAGTTACAGcCGGTCAAGATCTCCCGTTAGAAGAGAACGAAGCCCTGTTCGTGAAGACAGATCAAGGAGTCCACGCTCTGCAAGCCCCGAGCCCAGAAATAGCTCTTCACCCTCCAAGAGGAGGATGCGTAGTCGCACACCTGATGACAACAGCCCACAGAATAGAGGTGATGCGTCTCCTGGAAATGGTAGGGGGAGTCCGCGAGATGGATCCGACTACAGTGATGGTCCTAGGGGAAagagcagaagcagaagcccTGTTAGTCCCACGAGGGAGACTCGTGAAGATGCTAGCCCTAAAACAAACGGTCGCAGCCTCAGTGCTAGTCCTAGGGATGATAGGAGCCCTGTTGATGATGATAATGACACCCGCCGTTCGCCTAGAGGCAGTGAGTCACCTTA 1145 0.4987 MLYMPLSSAVLASVDTIYKNRKTHLQTSLALERVRKRSVSATINSGGMPRHDDRYGNTRLYVGRLSSRTRSRDLERVFSRYGRIRDVDMKHDFAFVEFSDPRDADDARYSLDGRDVDGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSRHARSYSRSPVRSRSPRRGRSRERSYSRDRSYSRSRSPVRRERSPVREDRSRSPRSASPEPRNSSSPSKRRMRSRTPDDNSPQNRGDASPGNGRGSPRDGSDYSDGPRGKSRSRSPVSPTRETREDASPKTNGRSLSASPRDDRSPVDDDNDTRRSPRGSESP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02650 354 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 53 337 - -
Bva04g02650 354 SUPERFAMILY RNA-binding domain, RBD 51 147 IPR035979 GO:0003676
Bva04g02650 354 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 53 337 - -
Bva04g02650 354 Gene3D - 48 136 IPR012677 -
Bva04g02650 354 MobiDBLite consensus disorder prediction 181 354 - -
Bva04g02650 354 Gene3D - 138 166 - -
Bva04g02650 354 Gene3D - 167 213 - -
Bva04g02650 354 MobiDBLite consensus disorder prediction 332 354 - -
Bva04g02650 354 ProSiteProfiles Zinc finger CCHC-type profile. 147 162 IPR001878 GO:0003676|GO:0008270
Bva04g02650 354 MobiDBLite consensus disorder prediction 188 210 - -
Bva04g02650 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 121 IPR000504 GO:0003723
Bva04g02650 354 MobiDBLite consensus disorder prediction 211 247 - -
Bva04g02650 354 SMART rrm1_1 59 124 IPR000504 GO:0003723
Bva04g02650 354 SUPERFAMILY Retrovirus zinc finger-like domains 138 186 IPR036875 GO:0003676|GO:0008270
Bva04g02650 354 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Bva04g02650 354 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Bva04g02650 354 Pfam Zinc knuckle 147 162 IPR001878 GO:0003676|GO:0008270
Bva04g02650 354 Pfam Zinc knuckle 168 185 IPR001878 GO:0003676|GO:0008270
Bva04g02650 354 MobiDBLite consensus disorder prediction 292 320 - -
Bva04g02650 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 128 IPR000504 GO:0003723
Bva04g02650 354 ProSiteProfiles Zinc finger CCHC-type profile. 169 185 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02650 Bva-Chr4 23385100 23389137 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02650 K12896 - qsu:111999218 377.867