Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02630 ATGAGAGATTTTGTGATCCTTGGCTCCTCCATTGTCACACCTCCCAACAACCCCTCTTCTCTTTCACAGCAGCACCACCATCACCATAACCATATTAGGCCCTTCAAATCCTCAATTCCGAAGCTCAATCCTTCCAAACAACCTTCTTCACTGTTGAGCATTTCTGACACTCACCAGATCCCCATCAAGCACTATGTTGGCCTCGCTTCCAAGCTTGCTGAAGATGGGAAACTCAAAGATTTTGAAATGCTTGTGGAGACTGTCATTGATTCCGGGATGGATACATCTCAGTTTGTTCCAGCTTTGAGTGTTGAGCTCCTCACAAAGGGGATTCCAGTGGCTATTCGTGGGGGCAGCATTCGAACTGTGATTCAGACTTTAAATGTTGTTCAAAAGCTTGGCATTTCTTTATCTTCTCTATCTGATGGGCCCGCTAAGGAACTGCTTGCAAGCGAATGTCGCAGGATTGTCAAGCGTGGCCAAATTGAAGAAGCAGTTGAATTCATGGAGGTTCTCTcacGTTTCCATTTATCAATCAGAGAACTGGTTCAGCCATCTGACATCATAAAACAATGTATTCTTAGTCGTAAGCCAAATTTGGCTGTGAGGTATGCATGTCTTCTTCCGCATGCACACATATTGTTCTGCAATATTATAAGTGAATTTGGAAAAAGGAGGGATTTAGTATGTGCTCTGAGGGCATATGAAGAATCCAAGAAGAACTTGAATAGTCCCAATATGTATTTATACCGGGCAATAATTGATGTTTGCGGGCTCTGTGGTGATTATCAGAAATCTAGGTACATATATGAGGAATTATTAAACCAGAAGATCACCCCAAACATATACGTCTTCAACAGTCTCATGAATGTGAATGCAAAAGATCTTAGCTACACGCTAGATCTATATAAGAATATGCAAAATCTAGGTCTGAAACCAGATATGGCAACTTATAACATCTTGCTGAAGGCTTGCTGTGTTGCTGGAAGAGTTGATTTCGCTCAAGAAATTTATAAGGAAGTTAAGCAGTTGGAATCAATGGGAGTATTGAAATTAGATGTCTTCACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAATTGTGGCACATggctttaaaaattaaacaggATATGCTGTCCGCTGGGGTCTCTCCTAATACTGTTGCATGGTCTTCATTAATCAATGCCTGTGCACATGCAGGGCTTGTGGAGCAGGCAATTCgtttatttgaagaaatgcTTTTGGCTGGTTGTGAACCTAATACACAGTGTTTCAATATCATTTTACATGCATGTGTTGAAGCTTGCCAATATGATAGGGCTTTTCGCCTTTTCAAGTCTTGGAAGGGAAATAAAATGTTAGAATCCTACGATGGGAGCAGCAATAGCAATTCAGAGCAGGGAGATGGGCATTCTGCCAGTAGTGcgccaaagccaaatggcagtTCCAATTCACATATTTTGAGTTTTGCCAGGAGGTTTCCCTTCACACCAACTATTacaacatataatattttattgaaggcCTGTGATATATGCGGAGAATCAGGCAATGTGGAGGGTGCCATTGagaTTTTGAAAGTCATGCACGATGCTGGAATCAAACCTGACGTTGTTGCATATACAACAGCCATCAAGGTTTGTGTAGGAAGTAAGAATTTTAAGGAGGCACTACTCTTATacgaagaaatgaaaatatatgatatacgTCCGAATTTGGTGACGTATAATACACTACTAAGAGCTCGCAGTAAATATGGCTCCCTACATGAAGTGCAACAATGCCTGGCTATATATCAGGACATGCGAAAAGCAGGGTACAAATCATGTGACCGCTATCTCCAAGAACTGATTGAGGAGTGGTGTGAAGGAGTAATACAGGATAACAGAGAGGATGAGGACGAGTCCTCTTCCAGCAATAAATCCGGATTAGAGAGACCTCAGAGTTTGCTTCTTGAGAAAATTGCAGCGCATCTGCAGAAGAGGGTAGCAGACATCCTAGCAATTGACGTCCAAGGGCTCACAAAGGTTGAAGCTCGCATGGTTGTTCTTGCTGTTCTGCGAATGATCAAGGAGAACTATGGCCTAGGACATTCAGTGAATGATGACATATTGATTATAATAGGAGCTAATAAAGCAGATGAAAATCCAGCCAAACTCACAATGGAAGTGGAAGATGCAATAACAAGACTTCTACGAGACGAAATAGGGCTTGAAGTTTTTCCAACCAGAGCCAGATTGACACTAAATGAAAGAGGAAGGTTAGGGAATGCTGTAATTTCAAATGCCAACTTGGAAGATACACCAGAAAAGAATGAATCACCCACAGTAATGGAATATCAGACCAGGAGGCCGGCAGTTGTACTAAGGTTGAAGGTCAGCAAAAAATCGTTGCACCATTGGTTGCAGAGGAAAGTAACCATTAACAAGATTTg 2441 0.3994 MRDFVILGSSIVTPPNNPSSLSQQHHHHHNHIRPFKSSIPKLNPSKQPSSLLSISDTHQIPIKHYVGLASKLAEDGKLKDFEMLVETVIDSGMDTSQFVPALSVELLTKGIPVAIRGGSIRTVIQTLNVVQKLGISLSSLSDGPAKELLASECRRIVKRGQIEEAVEFMEVLSRFHLSIRELVQPSDIIKQCILSRKPNLAVRYACLLPHAHILFCNIISEFGKRRDLVCALRAYEESKKNLNSPNMYLYRAIIDVCGLCGDYQKSRYIYEELLNQKITPNIYVFNSLMNVNAKDLSYTLDLYKNMQNLGLKPDMATYNILLKACCVAGRVDFAQEIYKEVKQLESMGVLKLDVFTYSTIIKVFADAKLWHMALKIKQDMLSAGVSPNTVAWSSLINACAHAGLVEQAIRLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRLFKSWKGNKMLESYDGSSNSNSEQGDGHSASSAPKPNGSSNSHILSFARRFPFTPTITTYNILLKACDICGESGNVEGAIEILKVMHDAGIKPDVVAYTTAIKVCVGSKNFKEALLLYEEMKIYDIRPNLVTYNTLLRARSKYGSLHEVQQCLAIYQDMRKAGYKSCDRYLQELIEEWCEGVIQDNREDEDESSSSNKSGLERPQSLLLEKIAAHLQKRVADILAIDVQGLTKVEARMVVLAVLRMIKENYGLGHSVNDDILIIIGANKADENPAKLTMEVEDAITRLLRDEIGLEVFPTRARLTLNERGRLGNAVISNANLEDTPEKNESPTVMEYQTRRPAVVLRLKVSKKSLHHWLQRKVTINKI 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02630 813 PANTHER OS03G0284900 PROTEIN 50 466 - -
Bva04g02630 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Bva04g02630 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 538 IPR002885 -
Bva04g02630 813 MobiDBLite consensus disorder prediction 15 50 - -
Bva04g02630 813 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 513 802 - -
Bva04g02630 813 Pfam Pentatricopeptide repeat domain 527 584 IPR002885 -
Bva04g02630 813 Gene3D Tetratricopeptide repeat domain 213 345 IPR011990 GO:0005515
Bva04g02630 813 Gene3D Tetratricopeptide repeat domain 346 483 IPR011990 GO:0005515
Bva04g02630 813 Gene3D Tetratricopeptide repeat domain 487 663 IPR011990 GO:0005515
Bva04g02630 813 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 50 466 - -
Bva04g02630 813 PANTHER OS03G0284900 PROTEIN 513 802 - -
Bva04g02630 813 Pfam PPR repeat 355 385 IPR002885 -
Bva04g02630 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 611 IPR002885 -
Bva04g02630 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 344 IPR002885 -
Bva04g02630 813 Pfam PPR repeat family 387 434 IPR002885 -
Bva04g02630 813 TIGRFAM PPR: pentatricopeptide repeat domain 504 540 IPR002885 -
Bva04g02630 813 TIGRFAM PPR: pentatricopeptide repeat domain 390 424 IPR002885 -
Bva04g02630 813 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Bva04g02630 813 TIGRFAM PPR: pentatricopeptide repeat domain 317 341 IPR002885 -
Bva04g02630 813 TIGRFAM PPR: pentatricopeptide repeat domain 541 574 IPR002885 -
Bva04g02630 813 TIGRFAM PPR: pentatricopeptide repeat domain 426 453 IPR002885 -
Bva04g02630 813 TIGRFAM PPR: pentatricopeptide repeat domain 355 389 IPR002885 -
Bva04g02630 813 MobiDBLite consensus disorder prediction 461 483 - -
Bva04g02630 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Bva04g02630 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Bva04g02630 813 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Bva04g02630 813 Pfam Pentacotripeptide-repeat region of PRORP 222 341 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02630 Bva-Chr4 23307310 23313502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02630 249 633 Glycosyltransferase AT1G05670 20.519 5.87e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02630 - - gmx:100794606 1056.2