LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g02544	ATGCCTGCAACTCCAATTCCATCTTCTTTCCTTATCCTGCAACCACGCTTCAATTTCAACTTTAAACCTATATTACAATCTCTTGACTAccaattttcatcttcttctgccGCATTCAATGGCGCTCGtaatttcttcatcccaaGATTCCCGCTTACTTCAAATGCTAGAGTTCACTCTAACTTGTCACAAGCGACGGCAACCGAGTCTCCGAGCGACAATGGGAGTGGCGGTGGTAGGTCAGGTGCGTTATCTCCTGGTCCAGTCACCGGAGATGTGCAGAAAATCGACGCAAACCCTCCCAAGGGGACACGGGATTTCCCGCCCGAAGACATGCGTATGCGAAACTGGCTTCTCAACAGTTTCAAAGAGGTTTCACGGTTGTATGGGTTCGAGGAGGTTGATTTTCCGGTGCTTGAATCAGAGGCATTATTCGTTAGGAAAGCAGGGGAGGAGATTAAAGATCAGCTTTATTGCTTTGAAGATAGGGGTAATCGACGCGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGAAAATCTCTGTCCCTCCCATTGAAGTGGTTTACTGTTGGACAATGTTGGCGATGTGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTATCAATGGAACATGGATATAATTGGTGTCCCTGGGGTGATGgCTGACGCAGAGCTCATATCTTCTATTGTCACCTTGCTCAAGCGGGTTGGAATCACAAAATCAGATGTTGGATTTAAGGTTTCAAGCCGAAAGGTTCTGCAAGAAGTATTAAGATGTTACTCCATCCCTGATAATTTATTTGGCAAGGTCTGCATCATAATTGACAAAATTGAGAAAATTCCGTCGGATGATGTAAAGAATGAGTTGAAGGCTCTTGGTATTTCCCAAGATGCTGTCCAGGAGCTATTGGAAGTCCTTTCAATAAGTTCATTGCCAGAGTTGGAAGAGAGACTTGGAAGTTCTGGGGAAGCAGTTGCTGAATTGAAAGAGCTATTCTCACTTGCTGATAAATTTGGGTATGCTGAGTGGCTTCAATTTGATGCATCGGTTGTTCGTGGCCTTTCTTACTACACTGGCATTGTATTTGAGGGTTTTGACAGAGAAGGGAAGCTGCGAGCTATTTGCGGCGGTGGCAGATATGATCACTTATTCTCAACTTTTGGTGGTGATGACATTCCTGCATGTGGTTTTGGATTTGGTGATGCTGTCATAGTGGAATTGCTCAAAGAAAAGGGCCTGCTACTGGAGCTCAGCTTGCAAATTGAAAACATTGTGTGTGCTTTGGATCTTGATCTACAAGGAGCTGCCTCTATGGTTGCTTCCATGCTGAGAGAAAAAGGGCAGACTGTTGATCTGGTCTTGGAAAGCAAACCACTGAAATGgGTTTTCAAAAGAGCAGCTCGAATAAATGCTCAGCGCTTGGTCCTAGTAGGGAATTCTGAATGGCAAAGGGGTATGGTTGGTGTCAAAATTCTCTCTACTGGTCAACAGTATGaggtcaaattggatgatctaGAGTA	1547	0.4344	MPATPIPSSFLILQPRFNFNFKPILQSLDYQFSSSSAAFNGARNFFIPRFPLTSNARVHSNLSQATATESPSDNGSGGGRSGALSPGPVTGDVQKIDANPPKGTRDFPPEDMRMRNWLLNSFKEVSRLYGFEEVDFPVLESEALFVRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSLSLPLKWFTVGQCWRCERMTRGRRREHYQWNMDIIGVPGVMADAELISSIVTLLKRVGITKSDVGFKVSSRKVLQEVLRCYSIPDNLFGKVCIIIDKIEKIPSDDVKNELKALGISQDAVQELLEVLSISSLPELEERLGSSGEAVAELKELFSLADKFGYAEWLQFDASVVRGLSYYTGIVFEGFDREGKLRAICGGGRYDHLFSTFGGDDIPACGFGFGDAVIVELLKEKGLLLELSLQIENIVCALDLDLQGAASMVASMLREKGQTVDLVLESKPLKWVFKRAARINAQRLVLVGNSEWQRGMVGVKILSTGQQYEVKLDDLE	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g02544	515	TIGRFAM	hisS: histidine--tRNA ligase	100	510	IPR015807	GO:0004821\|GO:0005524\|GO:0006427
	Bva04g02544	515	Gene3D	-	424	514	IPR036621	-
	Bva04g02544	515	SUPERFAMILY	Class II aaRS ABD-related	432	514	-	-
	Bva04g02544	515	Pfam	Anticodon binding domain	440	514	IPR004154	-
	Bva04g02544	515	ProSiteProfiles	Aminoacyl-transfer RNA synthetases class-II family profile.	103	356	IPR006195	-
	Bva04g02544	515	Gene3D	Bira Bifunctional Protein; Domain 2	94	421	IPR045864	-
	Bva04g02544	515	MobiDBLite	consensus disorder prediction	61	110	-	-
	Bva04g02544	515	CDD	HisRS-like_core	111	413	IPR041715	-
	Bva04g02544	515	PIRSF	His-tRNA_synth	94	515	IPR004516	GO:0005737
	Bva04g02544	515	MobiDBLite	consensus disorder prediction	61	79	-	-
	Bva04g02544	515	Pfam	Histidyl-tRNA synthetase	103	407	IPR041715	-
	Bva04g02544	515	Hamap	Histidine--tRNA ligase [hisS].	96	515	IPR015807	GO:0004821\|GO:0005524\|GO:0006427
	Bva04g02544	515	PANTHER	HISTIDYL-TRNA SYNTHETASE	94	515	IPR004516	GO:0005737
	Bva04g02544	515	PANTHER	HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED	94	515	-	-
	Bva04g02544	515	SUPERFAMILY	Class II aaRS and biotin synthetases	100	419	IPR045864	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g02544	Bva-Chr4	22893685	22899128	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g02544	K01892		-	gmx:100793186	804.283

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva04g02544	04	22893685	22899128	Bva04g02544	04	22893685	22899128	ECH