Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02496 ATGGCCACCCTAGTCCAGCCCTATTCATCCTCCATGCCTGCTTCTCCGTCGTCTTCCTACTCCCGACTTCCTCTATCTCCTTTGCTTCCTCAAAACCCTTTCTTTCATTGTCCCTTGAAATTACCACCACTCCCCTCTCGTTTCTACTCGGCCTCCCGGGCTCAGTTCCTTCTATACCCCGCAAGTTCTGTTTCTAGTTCTCCGTCCCTCTTCCTCTCAGAGTCTTTCAATTGCAAGGATTTTCCAGATGTGGGAGACTCTCTCGTTGAAGGGTTAATCAACTTGCTTCGCCTATCTGCTCGGTGCGACGATGCTGAACTTGTCAGGGCCGTACATGCATTCGTTCTCAAGCTCGAAGAAGAGACTTATCCGTCCAATGCTCTAATCGCGGCTTATTTGAAGCTCGACCTATTTTCCGACGCTTACAACGTTTTTCGGGGCCTTTCTTACCCCAATGTGGAGTCTTATACTAGGTTAATTTCTGGGTTTTCCAAGTCAAATCGAGAAGACGAAGCACTGAAGCTGTTCTTTCAAATGAGAAATTCTGGTATTGAACCAAACGGATACAGCTTTGTTGCAATTTTGACTACTTGTATTCGAATTATGGATTTACAATTGGGTCTACAGATACATGCTATGGTAATCAAATTGGGGTATTTGGATTGTGTTTTTGTTGCAAATGCACTCATGGCTTTGTATAGCAAGTGTGGATATTATGAAGTTGTGCCTAAATTGTTTGCTGAAATAACTCAAAGAGATATTGTAAGTTGGAATACTGTTATATCCAGTGCAGTAAATGAATTTATGTATGAATCAGCATTCCAGTTATTCCGTAACATGCAGGCAAAGGATGCATTGAGAGTAGATTATTTTACGTTGTCATCTCTCTTGTCTGCTTGTGCTGGAAGTACTGCGGTGATGGAAGGCCAACAAGTCCATGCACATGCTATTAAGATTGGATTGGACACAAATTTAAGCGTTAATAATGCACTTATTGGATTCTACACCAAGTGTGGAACTCTTAACAATGTGGTCTCATTGTTCGAGAGGATGGCCGTGAGAGATGTTATAACTTGGACGGAGATGGTAACAGCTTATATGGAGTTTGGGTTAGTGAATTTAGCTCTGCAGGCATTTGGTGAGATGCCAGAAAAAAATTCCTTCTCTTATAATGCTCTTTTGTCTGGATTTTGTCACAATGGTGAAGGATTAAAGGCTCTGAATTTGTTTGTTAAAATGGTGGAGGCACAAATCGAGTTAACAGATTTCTCTTTGACTAGTTTTATTAGTGCATCCAGCTTACTTGCGGATTACAGGATCAGCAAGCAGATTCATGGGTTTGTTCTCAAATTTGGTTTTGGATCAAATGCGTGTGTTGAAGCAGCATTGCTTGACATGTATACAAGGTGTGGGAGGATGGAAGATGCTAGAAAGATATTCTCTAGGTGGCAGTTAGAGGAAGGAAGCTCCGTAGCTTGGACATCAATGATATGTGGATATGCTCGAAATGGACAGCTAAATGAGGCAATTTCTCTTGTCCATCGTAGTCAATCAGAAGGGAAAATGGTTATGGATGAAATTTCATCATCTTCGGTGCTTGGCCTTTGTGGAACTATTGGCTGTCAGGAAGTGGGGAAACAAGTCCATTGTCATGCTCTTAAGTTGGGCCTTCTATCGGATATAGGAGTAGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTTGGAATGTGGATGATGCAATTAAGATGTTTAATCATATGCCCACGACCAATATAGTTTCATGGAATGCTTTAATTGCTGGCTATCTTCTTAACAGGCTGGGTGATAAAGCTTTGGGAATCTGGTCAAACATGCAGAAGAAGGGTATAAAGCCGGATAAAGTTACATTCGTTTTGATCATTTCAGCTTATAGGCAAACTAACTTGAATTTAGTTGATGATTGTCGTAATTTGTTCGACTCAATGAGAACTGTTTATGGCATTGAGCCTACTTCCGAGCATTATGCCTCCTTCATTAGTGTTTTGGGTTACTGGGGTCTTCtggaagaagcagaagaaacTATCAGTAAGATGCCTTTTGAACCGGATGCTTCCGTTTGGCGTGCTTTGCTTGATAGTTGTAAACAGCACAAGAATACAATCATTGGAAAACGGACTGCTAAGCATATTCTTTCCTTGGAACCAAGAGATCCGTCTACCTATATCCTTGTTTCAAATCTCTATTCTGCTTCTGGGATATGGCACTGCTCTGAAGCAGTCAGGGAAAATATGAGAGATAAGGGATTTCGCAAACACCCAGCTCAAAGTTGGATCATTTCCCAGAGGAAAATACATTCATTCTATGCAAGAGATAGATCCCATCCCCACGTTAAAGACATTTACAGAGGATTGGAGATTCTAATTTTGGAGTGCCTGAAAGTTGGATACGTACCCGACACGAGTTTTGTTCTTCACGAAGTAGAAGAGCATCAgaagaaagattttttattctatcatGGTCCAAAACTGGCAGCAACTTATGGACTTCTAATGACCAAGCCTGGAAAGTCCATTCGGATTGTAAAGAACATCCTCCTTTGTGGGGACTGCCATACATTCTTGAAATATGTATCTATTGTTACTAAGAGGGATATTTTTCTAAGAGACTCTTCAGGAGTTCATTGTTTCTCTAATGGCCAGTGCTCATGTAAAGATCACTGGTA 2702 0.4067 MATLVQPYSSSMPASPSSSYSRLPLSPLLPQNPFFHCPLKLPPLPSRFYSASRAQFLLYPASSVSSSPSLFLSESFNCKDFPDVGDSLVEGLINLLRLSARCDDAELVRAVHAFVLKLEEETYPSNALIAAYLKLDLFSDAYNVFRGLSYPNVESYTRLISGFSKSNREDEALKLFFQMRNSGIEPNGYSFVAILTTCIRIMDLQLGLQIHAMVIKLGYLDCVFVANALMALYSKCGYYEVVPKLFAEITQRDIVSWNTVISSAVNEFMYESAFQLFRNMQAKDALRVDYFTLSSLLSACAGSTAVMEGQQVHAHAIKIGLDTNLSVNNALIGFYTKCGTLNNVVSLFERMAVRDVITWTEMVTAYMEFGLVNLALQAFGEMPEKNSFSYNALLSGFCHNGEGLKALNLFVKMVEAQIELTDFSLTSFISASSLLADYRISKQIHGFVLKFGFGSNACVEAALLDMYTRCGRMEDARKIFSRWQLEEGSSVAWTSMICGYARNGQLNEAISLVHRSQSEGKMVMDEISSSSVLGLCGTIGCQEVGKQVHCHALKLGLLSDIGVGNAVVSMYFKCWNVDDAIKMFNHMPTTNIVSWNALIAGYLLNRLGDKALGIWSNMQKKGIKPDKVTFVLIISAYRQTNLNLVDDCRNLFDSMRTVYGIEPTSEHYASFISVLGYWGLLEEAEETISKMPFEPDASVWRALLDSCKQHKNTIIGKRTAKHILSLEPRDPSTYILVSNLYSASGIWHCSEAVRENMRDKGFRKHPAQSWIISQRKIHSFYARDRSHPHVKDIYRGLEILILECLKVGYVPDTSFVLHEVEEHQKKDFLFYHGPKLAATYGLLMTKPGKSIRIVKNILLCGDCHTFLKYVSIVTKRDIFLRDSSGVHCFSNGQCSCKDHW 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02496 900 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 502 886 - -
Bva04g02496 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Bva04g02496 900 Pfam PPR repeat family 385 431 IPR002885 -
Bva04g02496 900 Pfam PPR repeat family 253 301 IPR002885 -
Bva04g02496 900 Pfam PPR repeat family 591 637 IPR002885 -
Bva04g02496 900 Pfam PPR repeat family 151 198 IPR002885 -
Bva04g02496 900 Gene3D Tetratricopeptide repeat domain 642 787 IPR011990 GO:0005515
Bva04g02496 900 Gene3D Tetratricopeptide repeat domain 203 310 IPR011990 GO:0005515
Bva04g02496 900 Pfam E motif 710 771 IPR046848 -
Bva04g02496 900 Pfam E+ motif 777 798 IPR046849 -
Bva04g02496 900 TIGRFAM PPR: pentatricopeptide repeat domain 388 420 IPR002885 -
Bva04g02496 900 TIGRFAM PPR: pentatricopeptide repeat domain 491 520 IPR002885 -
Bva04g02496 900 TIGRFAM PPR: pentatricopeptide repeat domain 255 283 IPR002885 -
Bva04g02496 900 TIGRFAM PPR: pentatricopeptide repeat domain 155 187 IPR002885 -
Bva04g02496 900 TIGRFAM PPR: pentatricopeptide repeat domain 593 626 IPR002885 -
Bva04g02496 900 Pfam PPR repeat 491 520 IPR002885 -
Bva04g02496 900 Pfam PPR repeat 329 354 IPR002885 -
Bva04g02496 900 Pfam PPR repeat 462 483 IPR002885 -
Bva04g02496 900 Pfam PPR repeat 565 588 IPR002885 -
Bva04g02496 900 PANTHER OS07G0172600 PROTEIN 74 433 - -
Bva04g02496 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 385 IPR002885 -
Bva04g02496 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Bva04g02496 900 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 74 433 - -
Bva04g02496 900 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 440 505 - -
Bva04g02496 900 Pfam DYW family of nucleic acid deaminases 808 900 IPR032867 GO:0008270
Bva04g02496 900 Gene3D Tetratricopeptide repeat domain 549 641 IPR011990 GO:0005515
Bva04g02496 900 Gene3D Tetratricopeptide repeat domain 443 548 IPR011990 GO:0005515
Bva04g02496 900 Gene3D Tetratricopeptide repeat domain 82 202 IPR011990 GO:0005515
Bva04g02496 900 Gene3D Tetratricopeptide repeat domain 311 442 IPR011990 GO:0005515
Bva04g02496 900 PANTHER OS07G0172600 PROTEIN 440 505 - -
Bva04g02496 900 PANTHER OS07G0172600 PROTEIN 502 886 - -
Bva04g02496 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 625 IPR002885 -
Bva04g02496 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02496 Bva-Chr4 22640856 22643761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02496 94 900 Glycoside Hydrolase AT3G49170 32.078 1.04e-141 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02496 - - qsu:111997452 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02496 04 22640856 22643761 Bva04g02496 04 22640856 22643761 ECH