Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02474 ATGGCGGAGCATTTGGCCTCCATATTCGGAACCGAGAAGGACAGGGTGAACTGCCCTTTCTACTTCAAGATCGGAGCTTGCAGGCATGGCGACCGCTGTTCCAGACTTCACACTAAGCCCACCATTAGCCCCACCCTACTTCTCTCCAACATGTACCAGAGACCTGATATGATCAACCCAGTGGTTGACCCTAATCAAGGACAAGTACTTGACCCCGACAAAGTTCAAGATCACTTCGAGGATTTTTATGAAGATCTATTTGAGGAGCTGAGCAAGTATGGAGAAATTCAGAGCTTGAATATTTGTGATAATTTAGCTGATCACATGGTTGGTAATGTATATGTTCAGTTTAAAGAAGAGGACCATGCTGCAAATGCCCTAATGAATCTGACTGGAAGATTTTACTCAGGGCGACCCATCATTGTTGATTTTTCTCCTGTTACGGATTTTCGCGAGGCCACTTGTAGGCAGTACGAGGAAAATGTCTGTAATCGAGGTGGCTACTGCAACTTCATGCATCTGAAAAAGATTAGCAGGGAGTTGAGAAAACGATTATTTGGGAGAAGCAGGCGGGGGCACGGCCGCAGTAGAAGCAGAAGTCGAAGCCCTCCCAGGCATCGTAATGACGATCGTTCATATTCTGGTCGAAATTCTAGTAGAAGAGATTATGACAGACATGGCCAACATGGTCGGGGCAGATTGGGTAGAAGTGGTAGTCCTCGACGAAGAGGAAGACGGAGTAGGAGCCCTGTTAGAGAAAGTAGCGCAGAAAGGAGAGCTAAGATAGAGCAATGGAACAGGGAGAAGGAACAGGGAGAATCTGGTAACAAGCACGATAGGAATGACAATGATTATGAACAAGGGAGTGATGCACAGAATGGAGACGACTACGATAACCACCAGACATA 908 0.4648 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMINPVVDPNQGQVLDPDKVQDHFEDFYEDLFEELSKYGEIQSLNICDNLADHMVGNVYVQFKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRKRLFGRSRRGHGRSRSRSRSPPRHRNDDRSYSGRNSSRRDYDRHGQHGRGRLGRSGSPRRRGRRSRSPVRESSAERRAKIEQWNREKEQGESGNKHDRNDNDYEQGSDAQNGDDYDNHQT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02474 302 ProSiteProfiles Zinc finger C3H1-type profile. 149 176 IPR000571 GO:0046872
Bva04g02474 302 MobiDBLite consensus disorder prediction 185 302 - -
Bva04g02474 302 SMART rrm1_1 45 143 IPR000504 GO:0003723
Bva04g02474 302 CDD RRM_U2AF35B 44 146 - -
Bva04g02474 302 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 296 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva04g02474 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 140 IPR000504 GO:0003723
Bva04g02474 302 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Bva04g02474 302 SUPERFAMILY RNA-binding domain, RBD 78 150 IPR035979 GO:0003676
Bva04g02474 302 MobiDBLite consensus disorder prediction 249 286 - -
Bva04g02474 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 147 IPR000504 GO:0003723
Bva04g02474 302 MobiDBLite consensus disorder prediction 185 202 - -
Bva04g02474 302 Gene3D - 43 146 IPR012677 -
Bva04g02474 302 MobiDBLite consensus disorder prediction 203 231 - -
Bva04g02474 302 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva04g02474 302 PRINTS U2 auxiliary factor small subunit signature 76 91 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva04g02474 302 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva04g02474 302 PRINTS U2 auxiliary factor small subunit signature 104 126 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva04g02474 302 PRINTS U2 auxiliary factor small subunit signature 166 178 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva04g02474 302 PRINTS U2 auxiliary factor small subunit signature 131 155 IPR009145 GO:0000398|GO:0003723|GO:0089701
Bva04g02474 302 SMART c3hfinal6 149 175 IPR000571 GO:0046872
Bva04g02474 302 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Bva04g02474 302 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Bva04g02474 302 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 174 IPR000571 GO:0046872
Bva04g02474 302 SMART rrm2_1 68 143 IPR003954 GO:0003676
Bva04g02474 302 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02474 Bva-Chr4 22545509 22548830 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02474 K12836 - gmx:100811622 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02474 04 22545509 22548830 Bva04g02474 04 22545509 22548830 ECH