Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02394 ATGAATCCTAATTACAGTGAAGACATGGTGCTTGAACTACGGATTCGAGATATGACCGAACTCTCTGGTGTCCGCGAGCGACTGAAGTACCACCGGAATCCATTTCTCTCAATTCTCAACAATAAACTTGGAAGCTTTAGGTTGACCATGCTAAGCCCTACGGAGAAAAGATTAGGCGTCCACACTTACATCGCTCAGTGGCCAATTTCCACACTCGGATGGTCGATTCGACATGACAGAGACCCGCGCCTAGCCATTGGTAGTTTCCTAGAAGACTACAGCAACAAGGTTGAACTTGTTCACTTCAATTACGACACATTCAATTTCACTACCGATCCTCGTCTGATTTTCGACCACCCATATGCTCCGACGAACCTCATGTTCTTCCCCTCCGAGGACACCTCCAACCCCGACATCCTGGCCACCTCCGGCGACTACCTAAGACTATGGGAAATCCATGAAGATCGAATCGAACTCAGGTCCCTCCTAAATGGTAACAAACTCAGCGAGTATAACTCGCCGATAACCTCTTTTGATTGGGCCGAGTTTGATCCCCGCCGTGTCGCTGCATCAAGCGTGGACACCACGTGTACCATTTGGGATATAGAGAAGGAAGCCGTGGACACACAATTGGTGGCACATGACAAGGAAGTGTACGATATTTCATGGGGTGGTTTTAACATTTTTGCTTCGGTTTCGGGGGATGGTTCTGTTAGGGTGTTTGATTTGAGGGATAAAGAAAAATCGAccataatttatgaaaacccGGCGCAGCATTGTCCTTTGCTGCGTTTGGAATGGAACAAGGCTGATCCGAGGTTTATGGCTACTGTTGGAATGGACAGTAATAAAGTTGTGATAATGGATATAAGGTTGCCGACGACACCTTTGACGGAGTTAAGTAAGCACAAGAGGAGTGTTAATGCTGTATCGTGGTCCCCGCATATCGGACGGCATCTGTGCTCTGTTGGCGATGATTCGAGGGCTATGATTTGGGAGGTGGGCGGGACAGAGTTTCAAGCGGGGAATGGGGGTGATGTGGAGCCGGAGATGTGGTATGGATCAACGGATGAGATTAATCAAGTGCGTTGGTGTCATGTTCGGACGGACTGGATTGCTCTTACCTCATCAAATAAGTTACAGCTCTTGAAGGTGTA 1157 0.4736 MNPNYSEDMVLELRIRDMTELSGVRERLKYHRNPFLSILNNKLGSFRLTMLSPTEKRLGVHTYIAQWPISTLGWSIRHDRDPRLAIGSFLEDYSNKVELVHFNYDTFNFTTDPRLIFDHPYAPTNLMFFPSEDTSNPDILATSGDYLRLWEIHEDRIELRSLLNGNKLSEYNSPITSFDWAEFDPRRVAASSVDTTCTIWDIEKEAVDTQLVAHDKEVYDISWGGFNIFASVSGDGSVRVFDLRDKEKSTIIYENPAQHCPLLRLEWNKADPRFMATVGMDSNKVVIMDIRLPTTPLTELSKHKRSVNAVSWSPHIGRHLCSVGDDSRAMIWEVGGTEFQAGNGGDVEPEMWYGSTDEINQVRWCHVRTDWIALTSSNKLQLLKV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02394 385 ProSitePatterns Trp-Asp (WD) repeats signature. 188 202 IPR019775 -
Bva04g02394 385 PANTHER WD REPEAT CONTAINING PROTEIN 50 385 IPR045159 -
Bva04g02394 385 Pfam WD domain, G-beta repeat 211 242 IPR001680 GO:0005515
Bva04g02394 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 251 IPR001680 GO:0005515
Bva04g02394 385 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 50 385 - -
Bva04g02394 385 SMART WD40_4 293 333 IPR001680 GO:0005515
Bva04g02394 385 SMART WD40_4 164 201 IPR001680 GO:0005515
Bva04g02394 385 SMART WD40_4 110 151 IPR001680 GO:0005515
Bva04g02394 385 SMART WD40_4 204 242 IPR001680 GO:0005515
Bva04g02394 385 SMART WD40_4 248 289 IPR001680 GO:0005515
Bva04g02394 385 Gene3D - 60 385 IPR015943 GO:0005515
Bva04g02394 385 ProSitePatterns Trp-Asp (WD) repeats signature. 320 334 IPR019775 -
Bva04g02394 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 334 - -
Bva04g02394 385 SUPERFAMILY WD40 repeat-like 68 382 IPR036322 GO:0005515
Bva04g02394 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 334 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02394 Bva-Chr4 22129319 22131546 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02394 K11805 - zju:107416321 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02394 04 22129319 22131546 Bva04g02394 04 22129319 22131546 ECH