Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02391 ATGGTATTTGTATCTGAGAAGGGGATTAAAGAAGCAATGTTGGCTCCAAGCTATATTGTGAAAGTGGGCAATTGTATCCAGATGGCATGGGAGGAAAATAATGTTGGGGACGGGGGAGAGAGGGAGTCGACTGTAGATAATGGTTTCTTGAAAGTGTCACCGCCTTCTATTAGTTCTCGTGGCTCTCTTGCTGATAGTGATCAAGTTCATAAGAGATGTGAAGGGAAAGATAATCTTTCTTATGCCAACATCCTACGTTCAAGAAACAAGTTCGTGGATGCTCTTGCTCTATATGAGCGTGTCCTGGAGAATGATAGTGGAAATGTAGAAGCTCTCATTGGAAAAGGGATATGCCTGCAGATGCAGAACATGGGAAAGCTTGCTTTTGATAGTTTTGCGGAGGCTATCAGGTTGGATCCTCAAAATGCTTGTGCCCTCACGCATTGTGGTATTCTTTACAAAGAAGAAGGTCACCTGGTGGAAGCAGCTGAGTCCTATCAGAAGGCTTTGCAAGTGGATCCTTCATACAAAGCAGCTGCTGAATGTCTGGCCATTGTTTTAACAGATATTGGTACAAACATAAAGCTTGCTGGCAACACTCAGGATGGAATTCAAAAGTATTATGAAGCCCTCAAAATAGATCCACACTATGCACCAGCATATTATAATCTCGGTGTTGTTTATTCTGAAATGATGCAATATGATATGGCCCTCAATTTCTATGAGAAGGCTGCACTGGAGAGGCCTATGTATGCTGAAGCATATTGCAACATGGGTGTCATTCATAAAAATCGCGGTGATTTGGAAGCAGCAATTGCTTGTTATGAGAGGTGTTTAGCTGTTTCACCAAATTTTGAGATTGCAAAGAATAATATGGCCATAGCCTTGACTGATTTGGGAACGAAGGTTAAATTGGAGGGGGATATCAATCAAGGCGTGGCTTACTATAAGAAAGCTTTGTATTATAATTGGCATTATGCTGATGCCATGTACAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGACATGGCTATTGTATTCTATGAGCTTGCTTTCCACTTCAATCCTCATTGTGCTGAAGCTTGTAACAACTTAGgagtaatatataaagatCGAGAAAACCTTGATAAAGCTGTAGAATGTTACCAGCTTGCTTTATCAATCAAACCAAACTTCTCACAGTCATTAAATAACCTTGGCGTTGTCTACACTGTCCAGGGTAAAATGGATTCTGCTGCTACTATGATAGAGAAAGCTATCATTGCAAATCCAACATATGCAGAAGCATACAATAATTTAGGGGTTCTTTACAGGGATGCCGGAGATATCACTCTGGCTATTAATGCTTATGAACAGTGTCTGAAGATAGATCCTGATTCTCGAAATGCTGGTCAGAACCGGTTGCTTGCAATGAATTACATAGATGAAGGAAATGATGACAAACTTTTTGAGGCTCACAGGGATTGGGGTAGGCGGTTTATGAGATTATACCCTCAGTACACATCATGGGACAATTCAAAAGATCCTGAACGACCTCTTGTGATAGGATATGTATCTCCTGATTATTTCACCCATTCTGTGTCATATTTCATAGAAGCTCCTCTCATCTATCATGACTATGCCAATTATAAAGTGATTGTTTATTCTGCAGTTGTCAAGGCAGATGCAAAAACTATTAGATTTAGGGAGAGAGTTCTGAAAAGGGGTGGTATCTGGAGAGACATTTATGGAATTGATGAAAAGAAGGTTGCCAGCATGGTTAGGGAAGATCAGGTTGACATTTTGGTAGAGCTTACAGGTCATACTGCTAACAATAAATTAGGAATGATGGCATGTCGACCTGCTCCTGTTCAGGTGACTTGGATCGGTTATCCCAATACAACTGGATTGCCTACAATTGATTATAGAATCACCGATTCACTTGCAGACCCTCCTGATACAAAGCAGAAACGTGTCGAAGAGTTAGTCAGAGTGCCAGAATCCTTCCTTTGTTATACACCTTCCCCCGAGGCTGGGCCTGTTTGCCCAACTCCTGCTCTTTCCAACGGGTTTGTTACATTTGGTAGCTTTAACAATCTTGCCAAGATCACACCTAAAGTACTGCAAGTTTGGGCAAGAATACTATGTGCAGTACCAAATTCTCGCCTTGTGGTAAAATGTAAACCGTTTTGTTGTGATAGTGTGAGGCAGAGATTCCTATCAACATTGGAGCGGTTGGGTTTGGAACCATTACGTGTTGACCTTCTACCTCTAATTCTACTTAACCATGATCATATGCAAGCATATTCTCTGATGGACATCAGTTTGGACACATTTCCATATGCCGGAACAACCACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCGGTACATGCACACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGTTTGGGGCATTTAATTGCCAAAAATGAAGATGAGTACGTGCAGTTGGCTCTGCAGCTGGCTTCTGACATTTCAGCACTGTCAAATTTGAGAATGAGTCTGCGAGAACTCATGGCCAAGTCCCCTCTCTGTGATGGAGCAAACTTTGCACTCGGTCTAGAGTCAACATATAGGAATATGTGGCGCAGATATTGCAAGGGAGACGTTCCATCTTTAAAGCGCATTGAACTGTTGCAGCAACCAGTGGATGGTGGTGACCCTTCTAATAAGGCATGTGAGCCAACAAGAAGCATAGACTCAAGAGAGGGCAGTCCTGGATCTTTCAAGTCCAACGGGTTGTCCAATTCAACGCAATCATCTAAGCTTAATGCCCGCAATTGTGAGGAAAATGGTGGGTCGTTGAATCACACTGGCAAACCAGAAAAGTGGATATG 2870 0.4181 MAWEENNVGDGGERESTVDNGFLKVSPPSISSRGSLADSDQVHKRCEGKDNLSYANILRSRNKFVDALALYERVLENDSGNVEALIGKGICLQMQNMGKLAFDSFAEAIRLDPQNACALTHCGILYKEEGHLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDMALNFYEKAALERPMYAEAYCNMGVIHKNRGDLEAAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDSAATMIEKAIIANPTYAEAYNNLGVLYRDAGDITLAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLIYHDYANYKVIVYSAVVKADAKTIRFRERVLKRGGIWRDIYGIDEKKVASMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPDTKQKRVEELVRVPESFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLSTLERLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGHLIAKNEDEYVQLALQLASDISALSNLRMSLRELMAKSPLCDGANFALGLESTYRNMWRRYCKGDVPSLKRIELLQQPVDGGDPSNKACEPTRSIDSREGSPGSFKSNGLSNSTQSSKLNARNCEENGGSLNHTGKPEKVSSN 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02391 931 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 40 861 - -
Bva04g02391 931 Pfam Glycosyl transferase family 41 476 638 IPR029489 -
Bva04g02391 931 Pfam Glycosyl transferase family 41 655 835 IPR029489 -
Bva04g02391 931 Pfam Tetratricopeptide repeat 191 217 IPR001440 GO:0005515
Bva04g02391 931 Pfam Tetratricopeptide repeat 225 258 IPR001440 GO:0005515
Bva04g02391 931 Pfam Tetratricopeptide repeat 334 367 IPR001440 GO:0005515
Bva04g02391 931 Pfam Tetratricopeptide repeat 402 434 IPR001440 GO:0005515
Bva04g02391 931 MobiDBLite consensus disorder prediction 885 931 - -
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
Bva04g02391 931 SUPERFAMILY TPR-like 265 437 IPR011990 GO:0005515
Bva04g02391 931 MobiDBLite consensus disorder prediction 1 37 - -
Bva04g02391 931 SUPERFAMILY TPR-like 348 801 IPR011990 GO:0005515
Bva04g02391 931 Gene3D Glycogen Phosphorylase B; 653 827 - -
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Bva04g02391 931 MobiDBLite consensus disorder prediction 22 37 - -
Bva04g02391 931 Pfam Tetratricopeptide repeat 370 395 - -
Bva04g02391 931 SUPERFAMILY TPR-like 50 274 IPR011990 GO:0005515
Bva04g02391 931 Pfam Tetratricopeptide repeat 55 116 - -
Bva04g02391 931 ProSiteProfiles TPR repeat region circular profile. 334 366 - -
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 368 401 IPR019734 GO:0005515
Bva04g02391 931 Gene3D Tetratricopeptide repeat domain 161 265 IPR011990 GO:0005515
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Bva04g02391 931 ProSiteProfiles TPR repeat profile. 300 333 IPR019734 GO:0005515
Bva04g02391 931 Gene3D - 476 648 - -
Bva04g02391 931 ProSiteProfiles TPR repeat region circular profile. 402 434 - -
Bva04g02391 931 Gene3D Tetratricopeptide repeat domain 266 475 IPR011990 GO:0005515
Bva04g02391 931 ProSiteProfiles TPR repeat region circular profile. 225 257 - -
Bva04g02391 931 ProSiteProfiles TPR repeat region circular profile. 191 217 - -
Bva04g02391 931 MobiDBLite consensus disorder prediction 864 931 - -
Bva04g02391 931 SMART sel1 225 256 IPR006597 -
Bva04g02391 931 SMART sel1 191 222 IPR006597 -
Bva04g02391 931 SMART sel1 402 433 IPR006597 -
Bva04g02391 931 SMART sel1 300 331 IPR006597 -
Bva04g02391 931 SMART sel1 334 365 IPR006597 -
Bva04g02391 931 Gene3D Tetratricopeptide repeat domain 45 160 IPR011990 GO:0005515
Bva04g02391 931 SMART tpr_5 266 299 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 191 224 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 116 149 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 48 81 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 225 258 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 334 367 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 157 190 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 82 115 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 300 333 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 368 401 IPR019734 GO:0005515
Bva04g02391 931 SMART tpr_5 402 435 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02391 Bva-Chr4 22105223 22113267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02391 210 910 Glycosyltransferase AT3G11540 65.537 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02391 K09667 - gmx:100776844 1682.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02391 04 22105223 22113267 Bva04g02391 04 22105223 22113267 ECH