Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02378 ATGGCTCCAATCACCAAAAGGCTAGAAGGTAAGGTGGCAATAATCACAGGAGGCTCTAGCGGCATTGGTGCGGCAACTGCTAAGCTATTTGTTCAGCATGGTGCTAAGGTCATTGTTGCTGATGTTCAAGATGACCTTGGCCACTCACTTTGCAAAGCACTCGGGCCAAACGACACAGTTTTCTACGTTCACTGCGACGTCACATCTGACTCAGACGTCAAAAACGTCGTTGACACGGCAGTGTCCAAGTTCGGGAAGCTTGACATCATGTACAACAACGCAGGCATCGCCGGAGCAGCGGATCTCACGACACTGTATTCTGATAACGAGAATTTCAAAAGGGTTTTTGAAGTTAACGTTTACGGAGCTTTCTTGGGTGCCAAGCATGCTGCCAGGGTTATGATCCCATCAAATAAAGGGGTCATTCTTTTCACTGCAAGTGTTGCTTCTGTGATTGCTGGGGCGTCTCCACACGCTTACACTGTGTCAAAGCACGCAGTGGCGGGCCTCATGAAGAACTTGTGCGTGGAGTTAGGGCAACATGGAATCAGAGTGAATTGTATCTCTCCGGCCGCCATTTCTACTCCATTGCTGAACAATGCCTTGAAAATGGACAAGAAGGTGATAGAGGATATTCTAAGGGCAGCCTCAGTGTTAAAAGGTGGAATCCTAGAGGTGGAGGATATAGCAGAGGCAGCGGTTTATTTGAGCAGCGAGGAGTCCAAGCATGTCAGTGGAGTGAATTTGGTAGTGGATGGGGGTTATAGCACCACCAATCTCTCTTTCACTTCTGCAATCAAAAATGTGATGAATCACACCACAATCTG 827 0.4788 MAPITKRLEGKVAIITGGSSGIGAATAKLFVQHGAKVIVADVQDDLGHSLCKALGPNDTVFYVHCDVTSDSDVKNVVDTAVSKFGKLDIMYNNAGIAGAADLTTLYSDNENFKRVFEVNVYGAFLGAKHAARVMIPSNKGVILFTASVASVIAGASPHAYTVSKHAVAGLMKNLCVELGQHGIRVNCISPAAISTPLLNNALKMDKKVIEDILRAASVLKGGILEVEDIAEAAVYLSSEESKHVSGVNLVVDGGYSTTNLSFTSAIKNVMNHTTI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02378 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Bva04g02378 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Bva04g02378 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Bva04g02378 275 Gene3D - 3 271 - -
Bva04g02378 275 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 2 268 - -
Bva04g02378 275 Pfam Enoyl-(Acyl carrier protein) reductase 19 256 - -
Bva04g02378 275 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Bva04g02378 275 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Bva04g02378 275 PRINTS Glucose/ribitol dehydrogenase family signature 181 198 IPR002347 -
Bva04g02378 275 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Bva04g02378 275 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Bva04g02378 275 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Bva04g02378 275 CDD secoisolariciresinol-DH_like_SDR_c 7 256 IPR045309 GO:0016616
Bva04g02378 275 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 2 268 - -
Bva04g02378 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 257 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02378 Bva-Chr4 22043820 22044937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02378 8 262 Miscellaneous Gene Families AT2G29150 31.538 3.91e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02378 - - aprc:113863381 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02378 04 22043820 22044937 Bva04g02378 04 22043820 22044937 ECH