Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02324 ATGGAAGATCTATTCGCTGATCAAGACAACAACTTCTGGGACCTCGATTATCCTTCTCAATTGCGCCCTACACGTCGCTatcttgaagaagaagagcgTAACCTTGGGAGTGAAAGAGTCTACTTGATTCCCTACAGGTGGTGGAAGGAGGCAGAAAGTGATGCTGATCGGGTAGAAGGTGTTCTATACACGGTATCAACGAACACTGATTCGGACTCGGAAATATTCCTTGATCTAAGGAAGGAAGACGACCGCCGCAGAATTGAAAGCACTGAGGTGGGGGTTTCAGGCCGTCAGTATGCTTTGGTTGCTGAAGGAATGTGGTTGCGTGCTCTCAAGCGTTATAATGATTTCAATAATGCGGTGAAGGATTTGGGGAGCCTATTCTTTGCAGAAGGTAGTTTGCCGGATTTTTTCCCCTTGCAAGTTAGGATATCTGTTTCATGGGAAACAAATTCACTGGTAGCAAAAATAAGCCAAAAGGAAAATGCAGCTGACTTCTACAAGAAGGCTTGCAATATTTTCAGTTTTGAGCATAAGCCAATGCACATTTGGGATTTCTCAGGCCAGACAACCCAGTTTTTCATAAATGAAAGGGTTAATTTGTCCAATGATTCTCCTGGACAACCTGGAAAAGAGGTTCTTCTAGAGCTCGAAGTTCATGGACTTTCAGATTCCTTCAGGGGTAATAAAAGCAATGAGATGATTGCAGTCGGGTCTAAGATGGAATTTTCTTCTGACAGTGGCTCTGTTGTGATGAACGGAAGCACTGACGCTGTGAATCCCTATGTAACAGCAATCAACTCCTTATATAGGAGTAGCTGCAGAGCAGTTGGCCCTTTGGGCTTGACTGGATTACAGAATCTTGGAAATACTTGTTTTATGAATAGTGCCCTTCAGTGTTTGGTTCACACCCCAAagcttgttgatttttttctgggagattaccaaaaagaaataaattatgaaaatccCTTGGGGATGAATGGGGAACTTGCTTTAGCTTTTGGAGATTTACTGAGGAAGCTTTGGGTACCAGGGGCAAGGACCGTAGCACCAAGAATGTTCAAGATGAAGCTTGCCAATTTTGCTCCTCAGTTTAGTGGCTATAACCAGCATGATTCTCAAGAGCTTCTTGCTTTTCTGTTGGATGGACTTCATGAAGATCTTAACCGTGTAAAACGGAAGCCTTATCATGAAGTTAAGGATGCAGATGGTTGTTCAGATGAAGAAGTGGCAGAAGAATATTGGCGAAATCACCTTGCTCGCAATGACTCCATCATAGTTGATCTGTGCCAAGGTCAGTTCCGGTCAACATTGGTTTGCCCTATTTGCAAGAAGGTCTCTGTTACATTTGACCCTTTTATGTACCTGTCTTTGCCATTACCTTCAACTACCATGCGGACCATGAATTTGACTGTCCTGAACACCAATGGGGTTACGTTGCCTTCTGCACTTACTATAAGAGTTCCCAAACATGGAAGTCTGAAGGATCTTATCGAGGCTGTAAGTGCTGCTTGTTTTCTAAGGGACGATGAAACCCTATTGGTGGCTGAGATATACAAGAATCGCATCGTTCGTGTGTTGGAGGGGCCATCTGATTCATTAGCCTTGATTAGAGATGAGGACAAACTTGTTGCTTATCGACTGCGAAAAGATGATGATGCTAGCCACTTGGTTGTTTTCACCCACCAACAGGTGAAAAAGGAATGTGGTTATGGGAAGGAGATGTTCACAGAGGTTTTGTTTGGCATCCCAATTGTGGCAAGGTTGTCCAGTCTTTCTAGTGGATTTGATATTTGCAAGGAGTTTCTGAAGTTAATCAACCCATTCCTGATGCCCACTGAAGATGTATCtgataataatgatgatgatgtggATGATAAACCTGAAGATAATGAGATGGTTGATGCAACTAGCTCTGTTGCATTAGGCTCAGATAGTGAAACAGAGGATGACATGGATTTGGGGGCCGACTTCAAATTTTACTTGGCAAGTCCAAGGGTCCCAGGGATGGGGAATGTAAAGATAGAAATGAACAAACCATTACCGGTCATAGGGCATCCCAAAAATCTGGAGGTGATTGTCTTATGGTCAGATAAGATGATTCAGAAGTATGATACATGCCTGCTCAGCTCGTTGCCTGAGGTTTTCAAGCCCAATTTACTCACAACTAGAACACAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAGGGAGGAGCCTTTAGGGCCAGAAGACATGTGGTACTGTCCTAGCTGCAAAGGCCCCCAGCAAGCGATGAAAAAATTAGATCTTTGGAGATTACCTGAAATTCTTGTTGTCCATTTGAAGCGATTCTCGTACAACCGATACTTCAAGAACAAGCTGGAAACATTTGTAGATTTCCCAATCAATGATCTGGATTTCTCAACGTATGTTGCATGCAAGAATAGCCAGCCTTCCAACCGTTATGTGCTGTATGCTATTAGTTGTCATTATGGTTGCTTGGGAGGTGGTCACTATACAGCATTTGTTCGAGTTGGTCAAAATACATGGTATGAGTTTGATGACAGCAGAGTTTCCCCTGTAAGTGAGGAGACGATAAAGACTTCTGCTGCATATGTTCTTTTCTACAAGAGAGTTTA 2636 0.4173 MEDLFADQDNNFWDLDYPSQLRPTRRYLEEEERNLGSERVYLIPYRWWKEAESDADRVEGVLYTVSTNTDSDSEIFLDLRKEDDRRRIESTEVGVSGRQYALVAEGMWLRALKRYNDFNNAVKDLGSLFFAEGSLPDFFPLQVRISVSWETNSLVAKISQKENAADFYKKACNIFSFEHKPMHIWDFSGQTTQFFINERVNLSNDSPGQPGKEVLLELEVHGLSDSFRGNKSNEMIAVGSKMEFSSDSGSVVMNGSTDAVNPYVTAINSLYRSSCRAVGPLGLTGLQNLGNTCFMNSALQCLVHTPKLVDFFLGDYQKEINYENPLGMNGELALAFGDLLRKLWVPGARTVAPRMFKMKLANFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGCSDEEVAEEYWRNHLARNDSIIVDLCQGQFRSTLVCPICKKVSVTFDPFMYLSLPLPSTTMRTMNLTVLNTNGVTLPSALTIRVPKHGSLKDLIEAVSAACFLRDDETLLVAEIYKNRIVRVLEGPSDSLALIRDEDKLVAYRLRKDDDASHLVVFTHQQVKKECGYGKEMFTEVLFGIPIVARLSSLSSGFDICKEFLKLINPFLMPTEDVSDNNDDDVDDKPEDNEMVDATSSVALGSDSETEDDMDLGADFKFYLASPRVPGMGNVKIEMNKPLPVIGHPKNLEVIVLWSDKMIQKYDTCLLSSLPEVFKPNLLTTRTQESVSIYKCLEAFLREEPLGPEDMWYCPSCKGPQQAMKKLDLWRLPEILVVHLKRFSYNRYFKNKLETFVDFPINDLDFSTYVACKNSQPSNRYVLYAISCHYGCLGGGHYTAFVRVGQNTWYEFDDSRVSPVSEETIKTSAAYVLFYKRV 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02324 878 Gene3D Cysteine proteinases 687 878 - -
Bva04g02324 878 Pfam Ubiquitin carboxyl-terminal hydrolase 284 875 IPR001394 GO:0004843|GO:0016579
Bva04g02324 878 MobiDBLite consensus disorder prediction 618 638 - -
Bva04g02324 878 CDD Peptidase_C19R 706 876 - -
Bva04g02324 878 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 821 838 IPR018200 GO:0004843|GO:0006511
Bva04g02324 878 MobiDBLite consensus disorder prediction 618 632 - -
Bva04g02324 878 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 284 878 IPR028889 -
Bva04g02324 878 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 878 - -
Bva04g02324 878 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 878 - -
Bva04g02324 878 Gene3D Cysteine proteinases 273 515 - -
Bva04g02324 878 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 285 300 IPR018200 GO:0004843|GO:0006511
Bva04g02324 878 SUPERFAMILY Cysteine proteinases 282 878 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02324 Bva-Chr4 21755531 21762532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02324 721 878 Miscellaneous Gene Families AT4G31670 32.298 5.69e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02324 - K21343 cam:101507058 1220.3