Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02316 ATGGGCACCATGGATTCCTCCATCTATGGTGTCTCCAAACCCTTCTTTCTCTTCGTTGCCActcttttgtttctctctcctctGCCTTTCCATTCCGCATTGCCTCAAAACTCCACCCGCAAATCCTCATCTTCCTCGGCGTCGGGTCAGATTAACTCTAACTCGGTTCTCGTGGCTCTTCTTGATTCGCATTACACCGAGCTTTCCGAGCTTGTAGAGAAAGCGCTTCTTTTGCAGACTCTTGAGGACAACGTTGGGAAGCACAATATTACCATTTTCGCGCCCAGAAATGAAGCTTTGGAGCGACAGCTTGACCCCGAGTTCAAGCGATTCTTGCTTGAACCCGGCAACTTGAAGTCATTGCAGACGCTTTTGATGTTTCACATTGTTCCCAAACGAATCGCGTCTCACCAATGGCCAACTGGGAATTCCGGGTTGTTAAAGCACCGGACCTTGAGCAACGACCATGTGCATTTGATGAAGAAGGATTCGGGGAAGAACGTTGTTGACTCGGCGGAGATTGTTCGTCCGGATGACGTGGTTCGTCCCGACGGTTTGATTCACGGGATTGAGCGCTTGTTGATTCCACGATCGGTGCAGGAGGATTTTAATAGAAGGAGGAATTTACGGGATATCTCGGCCGTTTTACCAGAGGGAGCGCCGGAGGTGGATCCCAGAACCCACCGGTTGAAGAAGCCCGCACCAGTACCCGCCGGGGCTCCACCGGTATTACCAATTTACGATGCCATGGCACCAGGTCCCTCACTGGCTCCGGCTCCGGCGCCGGGACCCGGTGGACCTCGCGGTCACTTCAATGGGATGCGGCAGGTGAAGGACTTCATCCAGACTCTGTTACATTACGGTGGGTACAATGAAATGGCTGATATTCTGGTTAACTTAACCTCTCTAGCCACCGAAATGGGAAGGTTAGTCTCAGAGGGTTACGTCATCACCGTGTTGGCTCCGAACGACGAGGCCATGGCGAAGCTAACCACAGACCAATTGAGTGAACCGGGTGCACCGGAGCAGATAATCTACTACCATATAATACCCGAGTATCAGACCGAGGAGAGCATGTACAATGCAGTGAGGAGGTTCGGGAAGGTCCGCTACGATACACTGCGGTTACCACATAAGGTGGTGGCTCAGGAAGCCGACGGTTCggtgaaatttggtcacgatgAAGGCTCTGCCTATCTGTTTGACCCTGATATATACACAGATGGAAGAATTTCGGTGCAGGGTATTGATGGGGTGCTTTTCCCACCGGAAGAAGAGCCAAAGACAGAGCAGATAACAGCTCCACTTGTTAAAGTTGCTGCCAAACCAAGGAGAgGGAAATTGCTGGAAGTAGCTTGTAACTTGCTTGGAGCCTTTGGACAAGTCTGCTA 1391 0.5004 MGTMDSSIYGVSKPFFLFVATLLFLSPLPFHSALPQNSTRKSSSSSASGQINSNSVLVALLDSHYTELSELVEKALLLQTLEDNVGKHNITIFAPRNEALERQLDPEFKRFLLEPGNLKSLQTLLMFHIVPKRIASHQWPTGNSGLLKHRTLSNDHVHLMKKDSGKNVVDSAEIVRPDDVVRPDGLIHGIERLLIPRSVQEDFNRRRNLRDISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPRGHFNGMRQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVITVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHDEGSAYLFDPDIYTDGRISVQGIDGVLFPPEEEPKTEQITAPLVKVAAKPRRGKLLEVACNLLGAFGQVC 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02316 463 SUPERFAMILY FAS1 domain 56 197 IPR036378 -
Bva04g02316 463 SMART fasc_3 318 423 IPR000782 -
Bva04g02316 463 SMART fasc_3 91 197 IPR000782 -
Bva04g02316 463 ProSiteProfiles FAS1/BIgH3 domain profile. 277 405 IPR000782 -
Bva04g02316 463 Pfam Fasciclin domain 302 421 IPR000782 -
Bva04g02316 463 Pfam Fasciclin domain 64 196 IPR000782 -
Bva04g02316 463 SUPERFAMILY FAS1 domain 256 424 IPR036378 -
Bva04g02316 463 ProSiteProfiles FAS1/BIgH3 domain profile. 52 194 IPR000782 -
Bva04g02316 463 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 461 IPR044654 -
Bva04g02316 463 Gene3D FAS1 domain 56 197 IPR036378 -
Bva04g02316 463 Gene3D FAS1 domain 273 423 IPR036378 -
Bva04g02316 463 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 4 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02316 Bva-Chr4 21718369 21721589 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02316 - - qsu:112003793 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02316 04 21718369 21721589 Bva04g02316 04 21718369 21721589 ECH